diff --git a/main.go b/main.go
index 85c30d7f..f3dc055a 100644
--- a/main.go
+++ b/main.go
@@ -23,7 +23,7 @@ const ConfigLogTemplate = `Config --
Static Files: %s
Client Name: %s
Katsu URL: %v
- WES URL: %v
+ Gohan URL: %v
Bento Portal Url: %s
Port: %d
Translated: %t
@@ -37,7 +37,7 @@ type BentoConfig struct {
StaticFilesPath string `envconfig:"BENTO_PUBLIC_STATIC_FILES_PATH" default:"./www"`
ClientName string `envconfig:"BENTO_PUBLIC_CLIENT_NAME"`
KatsuUrl string `envconfig:"BENTO_PUBLIC_KATSU_URL"`
- WesUrl string `envconfig:"BENTO_PUBLIC_WES_URL"`
+ GohanUrl string `envconfig:"BENTO_PUBLIC_GOHAN_URL"`
BentoPortalUrl string `envconfig:"BENTO_PUBLIC_PORTAL_URL"`
Port int `envconfig:"INTERNAL_PORT" default:"8090"`
Translated bool `envconfig:"BENTO_PUBLIC_TRANSLATED" default:"true"`
@@ -114,7 +114,7 @@ func main() {
cfg.StaticFilesPath,
cfg.ClientName,
cfg.KatsuUrl,
- cfg.WesUrl,
+ cfg.GohanUrl,
cfg.BentoPortalUrl,
cfg.Port,
cfg.Translated,
@@ -176,14 +176,6 @@ func main() {
return c.JSON(http.StatusOK, result)
}
- wesRequest := func(path string, qs url.Values, c echo.Context, rf responseFormatterFunc) error {
- result, err := genericRequestJsonOnly(fmt.Sprintf("%s%s", cfg.WesUrl, path), qs, c, rf)
- if err != nil {
- return err
- }
- return c.JSON(http.StatusOK, result)
- }
-
katsuRequestBasic := func(path string, c echo.Context) error {
return katsuRequest(path, nil, c, jsonDeserialize)
}
@@ -201,11 +193,28 @@ func main() {
return jsonFormattedData, nil
}
- wesRequestWithDetailsAndPublic := func(c echo.Context) error {
- qs := url.Values{}
- qs.Add("with_details", "true")
- qs.Add("public", "true")
- return wesRequest("/runs", qs, c, jsonDeserialize)
+ dataTypesEndpointHandler := func(baseUrl string) echo.HandlerFunc {
+ return func(c echo.Context) error {
+ fullPath := fmt.Sprintf("%s/data-types", baseUrl)
+ result, err := genericRequestJsonOnly(fullPath, nil, c, jsonDeserialize)
+ if err != nil {
+ return err
+ }
+
+ resultSlice, ok := result.([]JsonLike)
+ if !ok {
+ return fmt.Errorf("result is not of type []JsonLike")
+ }
+
+ var modifiedResult []JsonLike
+ // Update the "count" value
+ for _, item := range resultSlice {
+ item["count"] = nil
+ modifiedResult = append(modifiedResult, item)
+ }
+
+ return c.JSON(http.StatusOK, modifiedResult)
+ }
}
fetchAndSetKatsuPublic := func(c echo.Context, katsuCache *cache.Cache) (JsonLike, error) {
@@ -359,8 +368,6 @@ func main() {
return katsuRequestBasic("/api/public_search_fields", c)
})
- e.GET("/wes-runs", wesRequestWithDetailsAndPublic)
-
e.GET("/provenance", func(c echo.Context) error {
// Query Katsu for datasets provenance
return katsuRequestBasic("/api/public_dataset", c)
@@ -382,6 +389,10 @@ func main() {
return c.String(http.StatusOK, string(data))
})
+ e.GET("/gohan/data-types", dataTypesEndpointHandler(cfg.GohanUrl))
+
+ e.GET("/katsu/data-types", dataTypesEndpointHandler(cfg.KatsuUrl))
+
// Run
e.Logger.Fatal(e.Start(fmt.Sprintf(":%d", cfg.Port)))
}
diff --git a/package-lock.json b/package-lock.json
index f467a500..dec588f3 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,46 +1,46 @@
{
"name": "bento_public",
- "version": "0.16.1",
+ "version": "0.17.0",
"lockfileVersion": 3,
"requires": true,
"packages": {
"": {
"name": "bento_public",
- "version": "0.16.1",
+ "version": "0.17.0",
"license": "LGPL-3.0-only",
"dependencies": {
"@ant-design/icons": "^5.2.6",
"@reduxjs/toolkit": "^1.9.7",
- "antd": "^5.10.3",
- "axios": "^1.6.0",
- "bento-charts": "^2.4.2",
+ "antd": "^5.11.5",
+ "axios": "^1.6.2",
+ "bento-charts": "^2.5.0",
"css-loader": "^6.8.1",
"dotenv": "^16.3.1",
- "i18next": "^23.6.0",
- "i18next-browser-languagedetector": "^7.1.0",
- "i18next-http-backend": "^2.3.1",
+ "i18next": "^23.7.7",
+ "i18next-browser-languagedetector": "^7.2.0",
+ "i18next-http-backend": "^2.4.2",
"leaflet": "^1.9.4",
"less": "^4.2.0",
"react": "^18.2.0",
"react-dom": "^18.2.0",
- "react-i18next": "^13.3.1",
- "react-icons": "^4.11.0",
+ "react-i18next": "^13.5.0",
+ "react-icons": "^4.12.0",
"react-leaflet": "^4.2.1",
"react-redux": "^8.1.3",
- "react-router-dom": "^6.17.0",
- "recharts": "^2.8.0",
+ "react-router-dom": "^6.20.0",
+ "recharts": "^2.10.3",
"redux": "^4.2.1",
"redux-thunk": "^2.4.1"
},
"devDependencies": {
- "@types/react-dom": "^18.2.14",
- "@typescript-eslint/eslint-plugin": "^6.9.0",
- "@typescript-eslint/parser": "^6.9.0",
+ "@types/react-dom": "^18.2.17",
+ "@typescript-eslint/eslint-plugin": "^6.13.1",
+ "@typescript-eslint/parser": "^6.13.1",
"@webpack-cli/serve": "^2.0.4",
"copy-webpack-plugin": "^11.0.0",
"cross-env": "^7.0.3",
"dotenv-webpack": "^8.0.1",
- "eslint": "^8.50.0",
+ "eslint": "^8.54.0",
"eslint-config-prettier": "^9.0.0",
"eslint-plugin-react": "^7.33.2",
"file-loader": "^6.2.0",
@@ -48,11 +48,11 @@
"html-webpack-plugin": "^5.5.3",
"less-loader": "~11.1.3",
"nodemon": "^3.0.1",
- "prettier": "^3.0.3",
+ "prettier": "^3.1.0",
"source-map-loader": "^4.0.1",
"style-loader": "^3.3.3",
- "ts-loader": "^9.5.0",
- "typescript": "~5.2.2",
+ "ts-loader": "^9.5.1",
+ "typescript": "~5.3.2",
"webpack": "^5.89.0",
"webpack-cli": "^5.1.4",
"webpack-dev-middleware": "^6.1.1",
@@ -77,9 +77,9 @@
}
},
"node_modules/@ant-design/cssinjs": {
- "version": "1.17.2",
- "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.17.2.tgz",
- "integrity": "sha512-vu7lnfEx4Mf8MPzZxn506Zen3Nt4fRr2uutwvdCuTCN5IiU0lDdQ0tiJ24/rmB8+pefwjluYsbyzbQSbgfJy+A==",
+ "version": "1.18.0",
+ "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.18.0.tgz",
+ "integrity": "sha512-NXzfnNjJgpn+L6d0cD2cS14Tsqs46Bsua6PwVMlmN+F0OEoa9PhJRwUWmI+HyIrc4cgVZVfQTDpXC0p07Jmglw==",
"dependencies": {
"@babel/runtime": "^7.11.1",
"@emotion/hash": "^0.8.0",
@@ -134,9 +134,9 @@
}
},
"node_modules/@babel/runtime": {
- "version": "7.23.2",
- "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.23.2.tgz",
- "integrity": "sha512-mM8eg4yl5D6i3lu2QKPuPH4FArvJ8KhTofbE7jwMUv9KX5mBvwPAqnV3MlyBNqdp9RyRKP6Yck8TrfYrPvX3bg==",
+ "version": "7.23.5",
+ "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.23.5.tgz",
+ "integrity": "sha512-NdUTHcPe4C99WxPub+K9l9tK5/lV4UXIoaHSYgzco9BCyjKAAwzdBI+wWtYqHt7LJdbo74ZjRPJgzVweq1sz0w==",
"dependencies": {
"regenerator-runtime": "^0.14.0"
},
@@ -196,9 +196,9 @@
}
},
"node_modules/@eslint/eslintrc": {
- "version": "2.1.2",
- "resolved": "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-2.1.2.tgz",
- "integrity": "sha512-+wvgpDsrB1YqAMdEUCcnTlpfVBH7Vqn6A/NT3D8WVXFIaKMlErPIZT3oCIAVCOtarRpMtelZLqJeU3t7WY6X6g==",
+ "version": "2.1.3",
+ "resolved": "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-2.1.3.tgz",
+ "integrity": "sha512-yZzuIG+jnVu6hNSzFEN07e8BxF3uAzYtQb6uDkaYZLo6oYZDCq454c5kB8zxnzfCYyP4MIuyBn10L0DqwujTmA==",
"dev": true,
"dependencies": {
"ajv": "^6.12.4",
@@ -219,9 +219,9 @@
}
},
"node_modules/@eslint/js": {
- "version": "8.52.0",
- "resolved": "https://registry.npmjs.org/@eslint/js/-/js-8.52.0.tgz",
- "integrity": "sha512-mjZVbpaeMZludF2fsWLD0Z9gCref1Tk4i9+wddjRvpUNqqcndPkBD09N/Mapey0b3jaXbLm2kICwFv2E64QinA==",
+ "version": "8.54.0",
+ "resolved": "https://registry.npmjs.org/@eslint/js/-/js-8.54.0.tgz",
+ "integrity": "sha512-ut5V+D+fOoWPgGGNj83GGjnntO39xDy6DWxO0wb7Jp3DcMX0TfIqdzHF85VTQkerdyGmuuMD9AKAo5KiNlf/AQ==",
"dev": true,
"engines": {
"node": "^12.22.0 || ^14.17.0 || >=16.0.0"
@@ -446,9 +446,9 @@
}
},
"node_modules/@rc-component/trigger": {
- "version": "1.18.0",
- "resolved": "https://registry.npmjs.org/@rc-component/trigger/-/trigger-1.18.0.tgz",
- "integrity": "sha512-vloGnWpeTmt7DBw0OHnG9poQ8h1WFh0hebq6fpgVjGYSxm6JU8rLH+kNwVNNvhL6Rg5He4ESjOk6O7uF9dJhxA==",
+ "version": "1.18.2",
+ "resolved": "https://registry.npmjs.org/@rc-component/trigger/-/trigger-1.18.2.tgz",
+ "integrity": "sha512-jRLYgFgjLEPq3MvS87fIhcfuywFSRDaDrYw1FLku7Cm4esszvzTbA0JBsyacAyLrK9rF3TiHFcvoEDMzoD3CTA==",
"dependencies": {
"@babel/runtime": "^7.23.2",
"@rc-component/portal": "^1.1.0",
@@ -499,17 +499,17 @@
}
},
"node_modules/@remix-run/router": {
- "version": "1.11.0",
- "resolved": "https://registry.npmjs.org/@remix-run/router/-/router-1.11.0.tgz",
- "integrity": "sha512-BHdhcWgeiudl91HvVa2wxqZjSHbheSgIiDvxrF1VjFzBzpTtuDPkOdOi3Iqvc08kXtFkLjhbS+ML9aM8mJS+wQ==",
+ "version": "1.13.0",
+ "resolved": "https://registry.npmjs.org/@remix-run/router/-/router-1.13.0.tgz",
+ "integrity": "sha512-5dMOnVnefRsl4uRnAdoWjtVTdh8e6aZqgM4puy9nmEADH72ck+uXwzpJLEKE9Q6F8ZljNewLgmTfkxUrBdv4WA==",
"engines": {
"node": ">=14.0.0"
}
},
"node_modules/@types/body-parser": {
- "version": "1.19.4",
- "resolved": "https://registry.npmjs.org/@types/body-parser/-/body-parser-1.19.4.tgz",
- "integrity": "sha512-N7UDG0/xiPQa2D/XrVJXjkWbpqHCd2sBaB32ggRF2l83RhPfamgKGF8gwwqyksS95qUS5ZYF9aF+lLPRlwI2UA==",
+ "version": "1.19.5",
+ "resolved": "https://registry.npmjs.org/@types/body-parser/-/body-parser-1.19.5.tgz",
+ "integrity": "sha512-fB3Zu92ucau0iQ0JMCFQE7b/dv8Ot07NI3KaZIkIUNXq82k4eBAqUaneXfleGY9JWskeS9y+u0nXMyspcuQrCg==",
"dev": true,
"dependencies": {
"@types/connect": "*",
@@ -517,27 +517,27 @@
}
},
"node_modules/@types/bonjour": {
- "version": "3.5.12",
- "resolved": "https://registry.npmjs.org/@types/bonjour/-/bonjour-3.5.12.tgz",
- "integrity": "sha512-ky0kWSqXVxSqgqJvPIkgFkcn4C8MnRog308Ou8xBBIVo39OmUFy+jqNe0nPwLCDFxUpmT9EvT91YzOJgkDRcFg==",
+ "version": "3.5.13",
+ "resolved": "https://registry.npmjs.org/@types/bonjour/-/bonjour-3.5.13.tgz",
+ "integrity": "sha512-z9fJ5Im06zvUL548KvYNecEVlA7cVDkGUi6kZusb04mpyEFKCIZJvloCcmpmLaIahDpOQGHaHmG6imtPMmPXGQ==",
"dev": true,
"dependencies": {
"@types/node": "*"
}
},
"node_modules/@types/connect": {
- "version": "3.4.37",
- "resolved": "https://registry.npmjs.org/@types/connect/-/connect-3.4.37.tgz",
- "integrity": "sha512-zBUSRqkfZ59OcwXon4HVxhx5oWCJmc0OtBTK05M+p0dYjgN6iTwIL2T/WbsQZrEsdnwaF9cWQ+azOnpPvIqY3Q==",
+ "version": "3.4.38",
+ "resolved": "https://registry.npmjs.org/@types/connect/-/connect-3.4.38.tgz",
+ "integrity": "sha512-K6uROf1LD88uDQqJCktA4yzL1YYAK6NgfsI0v/mTgyPKWsX1CnJ0XPSDhViejru1GcRkLWb8RlzFYJRqGUbaug==",
"dev": true,
"dependencies": {
"@types/node": "*"
}
},
"node_modules/@types/connect-history-api-fallback": {
- "version": "1.5.2",
- "resolved": "https://registry.npmjs.org/@types/connect-history-api-fallback/-/connect-history-api-fallback-1.5.2.tgz",
- "integrity": "sha512-gX2j9x+NzSh4zOhnRPSdPPmTepS4DfxES0AvIFv3jGv5QyeAJf6u6dY5/BAoAJU9Qq1uTvwOku8SSC2GnCRl6Q==",
+ "version": "1.5.4",
+ "resolved": "https://registry.npmjs.org/@types/connect-history-api-fallback/-/connect-history-api-fallback-1.5.4.tgz",
+ "integrity": "sha512-n6Cr2xS1h4uAulPRdlw6Jl6s1oG8KrVilPN2yUITEs+K48EzMJJ3W1xy8K5eWuFvjp3R74AOIGSmp2UfBJ8HFw==",
"dev": true,
"dependencies": {
"@types/express-serve-static-core": "*",
@@ -545,86 +545,86 @@
}
},
"node_modules/@types/d3-array": {
- "version": "3.0.9",
- "resolved": "https://registry.npmjs.org/@types/d3-array/-/d3-array-3.0.9.tgz",
- "integrity": "sha512-mZowFN3p64ajCJJ4riVYlOjNlBJv3hctgAY01pjw3qTnJePD8s9DZmYDzhHKvzfCYvdjwylkU38+Vdt7Cu2FDA=="
+ "version": "3.2.1",
+ "resolved": "https://registry.npmjs.org/@types/d3-array/-/d3-array-3.2.1.tgz",
+ "integrity": "sha512-Y2Jn2idRrLzUfAKV2LyRImR+y4oa2AntrgID95SHJxuMUrkNXmanDSed71sRNZysveJVt1hLLemQZIady0FpEg=="
},
"node_modules/@types/d3-color": {
- "version": "3.1.2",
- "resolved": "https://registry.npmjs.org/@types/d3-color/-/d3-color-3.1.2.tgz",
- "integrity": "sha512-At+Ski7dL8Bs58E8g8vPcFJc8tGcaC12Z4m07+p41+DRqnZQcAlp3NfYjLrhNYv+zEyQitU1CUxXNjqUyf+c0g=="
+ "version": "3.1.3",
+ "resolved": "https://registry.npmjs.org/@types/d3-color/-/d3-color-3.1.3.tgz",
+ "integrity": "sha512-iO90scth9WAbmgv7ogoq57O9YpKmFBbmoEoCHDB2xMBY0+/KVrqAaCDyCE16dUspeOvIxFFRI+0sEtqDqy2b4A=="
},
"node_modules/@types/d3-ease": {
- "version": "3.0.1",
- "resolved": "https://registry.npmjs.org/@types/d3-ease/-/d3-ease-3.0.1.tgz",
- "integrity": "sha512-VZofjpEt8HWv3nxUAosj5o/+4JflnJ7Bbv07k17VO3T2WRuzGdZeookfaF60iVh5RdhVG49LE5w6LIshVUC6rg=="
+ "version": "3.0.2",
+ "resolved": "https://registry.npmjs.org/@types/d3-ease/-/d3-ease-3.0.2.tgz",
+ "integrity": "sha512-NcV1JjO5oDzoK26oMzbILE6HW7uVXOHLQvHshBUW4UMdZGfiY6v5BeQwh9a9tCzv+CeefZQHJt5SRgK154RtiA=="
},
"node_modules/@types/d3-interpolate": {
- "version": "3.0.3",
- "resolved": "https://registry.npmjs.org/@types/d3-interpolate/-/d3-interpolate-3.0.3.tgz",
- "integrity": "sha512-6OZ2EIB4lLj+8cUY7I/Cgn9Q+hLdA4DjJHYOQDiHL0SzqS1K9DL5xIOVBSIHgF+tiuO9MU1D36qvdIvRDRPh+Q==",
+ "version": "3.0.4",
+ "resolved": "https://registry.npmjs.org/@types/d3-interpolate/-/d3-interpolate-3.0.4.tgz",
+ "integrity": "sha512-mgLPETlrpVV1YRJIglr4Ez47g7Yxjl1lj7YKsiMCb27VJH9W8NVM6Bb9d8kkpG/uAQS5AmbA48q2IAolKKo1MA==",
"dependencies": {
"@types/d3-color": "*"
}
},
"node_modules/@types/d3-path": {
- "version": "3.0.1",
- "resolved": "https://registry.npmjs.org/@types/d3-path/-/d3-path-3.0.1.tgz",
- "integrity": "sha512-blRhp7ki7pVznM8k6lk5iUU9paDbVRVq+/xpf0RRgSJn5gr6SE7RcFtxooYGMBOc1RZiGyqRpVdu5AD0z0ooMA=="
+ "version": "3.0.2",
+ "resolved": "https://registry.npmjs.org/@types/d3-path/-/d3-path-3.0.2.tgz",
+ "integrity": "sha512-WAIEVlOCdd/NKRYTsqCpOMHQHemKBEINf8YXMYOtXH0GA7SY0dqMB78P3Uhgfy+4X+/Mlw2wDtlETkN6kQUCMA=="
},
"node_modules/@types/d3-scale": {
- "version": "4.0.6",
- "resolved": "https://registry.npmjs.org/@types/d3-scale/-/d3-scale-4.0.6.tgz",
- "integrity": "sha512-lo3oMLSiqsQUovv8j15X4BNEDOsnHuGjeVg7GRbAuB2PUa1prK5BNSOu6xixgNf3nqxPl4I1BqJWrPvFGlQoGQ==",
+ "version": "4.0.8",
+ "resolved": "https://registry.npmjs.org/@types/d3-scale/-/d3-scale-4.0.8.tgz",
+ "integrity": "sha512-gkK1VVTr5iNiYJ7vWDI+yUFFlszhNMtVeneJ6lUTKPjprsvLLI9/tgEGiXJOnlINJA8FyA88gfnQsHbybVZrYQ==",
"dependencies": {
"@types/d3-time": "*"
}
},
"node_modules/@types/d3-shape": {
- "version": "3.1.4",
- "resolved": "https://registry.npmjs.org/@types/d3-shape/-/d3-shape-3.1.4.tgz",
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+ "version": "3.1.6",
+ "resolved": "https://registry.npmjs.org/@types/d3-shape/-/d3-shape-3.1.6.tgz",
+ "integrity": "sha512-5KKk5aKGu2I+O6SONMYSNflgiP0WfZIQvVUMan50wHsLG1G94JlxEVnCpQARfTtzytuY0p/9PXXZb3I7giofIA==",
"dependencies": {
"@types/d3-path": "*"
}
},
"node_modules/@types/d3-time": {
- "version": "3.0.2",
- "resolved": "https://registry.npmjs.org/@types/d3-time/-/d3-time-3.0.2.tgz",
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+ "version": "3.0.3",
+ "resolved": "https://registry.npmjs.org/@types/d3-time/-/d3-time-3.0.3.tgz",
+ "integrity": "sha512-2p6olUZ4w3s+07q3Tm2dbiMZy5pCDfYwtLXXHUnVzXgQlZ/OyPtUz6OL382BkOuGlLXqfT+wqv8Fw2v8/0geBw=="
},
"node_modules/@types/d3-timer": {
- "version": "3.0.1",
- "resolved": "https://registry.npmjs.org/@types/d3-timer/-/d3-timer-3.0.1.tgz",
- "integrity": "sha512-GGTvzKccVEhxmRfJEB6zhY9ieT4UhGVUIQaBzFpUO9OXy2ycAlnPCSJLzmGGgqt3KVjqN3QCQB4g1rsZnHsWhg=="
+ "version": "3.0.2",
+ "resolved": "https://registry.npmjs.org/@types/d3-timer/-/d3-timer-3.0.2.tgz",
+ "integrity": "sha512-Ps3T8E8dZDam6fUyNiMkekK3XUsaUEik+idO9/YjPtfj2qruF8tFBXS7XhtE4iIXBLxhmLjP3SXpLhVf21I9Lw=="
},
"node_modules/@types/eslint": {
- "version": "8.44.6",
- "resolved": "https://registry.npmjs.org/@types/eslint/-/eslint-8.44.6.tgz",
- "integrity": "sha512-P6bY56TVmX8y9J87jHNgQh43h6VVU+6H7oN7hgvivV81K2XY8qJZ5vqPy/HdUoVIelii2kChYVzQanlswPWVFw==",
+ "version": "8.44.8",
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+ "resolved": "https://registry.npmjs.org/@typescript-eslint/types/-/types-6.13.1.tgz",
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@@ -930,13 +930,13 @@
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+ "version": "6.13.1",
+ "resolved": "https://registry.npmjs.org/@typescript-eslint/typescript-estree/-/typescript-estree-6.13.1.tgz",
+ "integrity": "sha512-sBLQsvOC0Q7LGcUHO5qpG1HxRgePbT6wwqOiGLpR8uOJvPJbfs0mW3jPA3ujsDvfiVwVlWUDESNXv44KtINkUQ==",
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+ "@typescript-eslint/visitor-keys": "6.13.1",
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+ "version": "6.13.1",
+ "resolved": "https://registry.npmjs.org/@typescript-eslint/utils/-/utils-6.13.1.tgz",
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+ "@typescript-eslint/typescript-estree": "6.13.1",
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+ "version": "6.13.1",
+ "resolved": "https://registry.npmjs.org/@typescript-eslint/visitor-keys/-/visitor-keys-6.13.1.tgz",
+ "integrity": "sha512-NDhQUy2tg6XGNBGDRm1XybOHSia8mcXmlbKWoQP+nm1BIIMxa55shyJfZkHpEBN62KNPLrocSM2PdPcaLgDKMQ==",
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+ "deprecated": "Use your platform's native atob() and btoa() methods instead",
"dev": true
},
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@@ -1341,12 +1342,12 @@
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+ "version": "5.11.5",
+ "resolved": "https://registry.npmjs.org/antd/-/antd-5.11.5.tgz",
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- "@rc-component/trigger": "^1.18.0",
- "classnames": "^2.2.6",
- "copy-to-clipboard": "^3.2.0",
+ "@rc-component/trigger": "^1.18.2",
+ "classnames": "^2.3.2",
+ "copy-to-clipboard": "^3.3.3",
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"qrcode.react": "^3.1.0",
- "rc-cascader": "~3.18.1",
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- "rc-input": "~1.2.1",
- "rc-input-number": "~8.1.0",
- "rc-mentions": "~2.8.0",
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"rc-notification": "~5.3.0",
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"rc-resize-observer": "^1.4.0",
"rc-segmented": "~2.2.2",
- "rc-select": "~14.9.2",
- "rc-slider": "~10.3.1",
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+ "rc-slider": "~10.4.0",
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"rc-switch": "~4.1.0",
- "rc-table": "~7.34.4",
- "rc-tabs": "~12.12.1",
- "rc-textarea": "~1.4.0",
+ "rc-table": "~7.36.0",
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- "rc-tree": "~5.7.12",
- "rc-tree-select": "~5.13.0",
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"rc-upload": "~4.3.5",
- "rc-util": "^5.38.0",
- "scroll-into-view-if-needed": "^3.0.3",
+ "rc-util": "^5.38.1",
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+ "version": "1.6.2",
+ "resolved": "https://registry.npmjs.org/axios/-/axios-1.6.2.tgz",
+ "integrity": "sha512-7i24Ri4pmDRfJTR7LDBhsOTtcm+9kjX5WiY1X3wIisx6G9So3pfMkEiU7emUBe46oceVImccTEM3k6C5dbVW8A==",
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@@ -1598,9 +1599,9 @@
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+ "version": "2.5.0",
+ "resolved": "https://registry.npmjs.org/bento-charts/-/bento-charts-2.5.0.tgz",
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@@ -1817,9 +1818,9 @@
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+ "version": "1.0.30001565",
+ "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001565.tgz",
+ "integrity": "sha512-xrE//a3O7TP0vaJ8ikzkD2c2NgcVUvsEe2IvFTntV4Yd1Z9FVzh+gW+enX96L0psrbaFMcVcH2l90xNuGDWc8w==",
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@@ -1904,9 +1905,9 @@
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+ "version": "5.3.3",
+ "resolved": "https://registry.npmjs.org/clean-css/-/clean-css-5.3.3.tgz",
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@@ -1929,6 +1930,14 @@
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+ "resolved": "https://registry.npmjs.org/clsx/-/clsx-2.0.0.tgz",
+ "integrity": "sha512-rQ1+kcj+ttHG0MKVGBUXwayCCF1oh39BF5COIpRzuCEv8Mwjv0XucrI2ExNTOn9IlLifGClWQcU9BrZORvtw6Q==",
+ "engines": {
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+ }
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"resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz",
@@ -2681,9 +2690,9 @@
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+ "version": "1.4.600",
+ "resolved": "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.4.600.tgz",
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+ "version": "7.11.0",
+ "resolved": "https://registry.npmjs.org/envinfo/-/envinfo-7.11.0.tgz",
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"dev": true,
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@@ -2827,9 +2836,9 @@
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+ "version": "1.4.1",
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+ "version": "8.54.0",
+ "resolved": "https://registry.npmjs.org/eslint/-/eslint-8.54.0.tgz",
+ "integrity": "sha512-NY0DfAkM8BIZDVl6PgSa1ttZbx3xHgJzSNJKYcQglem6CppHyMhRIQkBVSSMaSRnLhig3jsDbEzOjwCVt4AmmA==",
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+ "version": "3.3.2",
+ "resolved": "https://registry.npmjs.org/fast-glob/-/fast-glob-3.3.2.tgz",
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@@ -3411,9 +3420,9 @@
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@@ -3421,7 +3430,7 @@
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+ "node": "^10.12.0 || >=12.0.0"
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@@ -4077,9 +4086,9 @@
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+ "version": "23.7.7",
+ "resolved": "https://registry.npmjs.org/i18next/-/i18next-23.7.7.tgz",
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@@ -4095,21 +4104,21 @@
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+ "version": "7.2.0",
+ "resolved": "https://registry.npmjs.org/i18next-browser-languagedetector/-/i18next-browser-languagedetector-7.2.0.tgz",
+ "integrity": "sha512-U00DbDtFIYD3wkWsr2aVGfXGAj2TgnELzOX9qv8bT0aJtvPV9CRO77h+vgmHFBMe7LAxdwvT/7VkCWGya6L3tA==",
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+ "version": "2.4.2",
+ "resolved": "https://registry.npmjs.org/i18next-http-backend/-/i18next-http-backend-2.4.2.tgz",
+ "integrity": "sha512-wKrgGcaFQ4EPjfzBTjzMU0rbFTYpa0S5gv9N/d8WBmWS64+IgJb7cHddMvV+tUkse7vUfco3eVs2lB+nJhPo3w==",
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@@ -4138,9 +4147,9 @@
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"integrity": "sha512-xWGDIW6x921xtzPkhiULtthJHoJvBbF3q26fzloPCK0hsvxtPVelvftw3zjbHWSkR2km9Z+4uxbDDK/6Zw9B8w=="
},
- "node_modules/react-resize-detector": {
- "version": "8.1.0",
- "resolved": "https://registry.npmjs.org/react-resize-detector/-/react-resize-detector-8.1.0.tgz",
- "integrity": "sha512-S7szxlaIuiy5UqLhLL1KY3aoyGHbZzsTpYal9eYMwCyKqoqoVLCmIgAgNyIM1FhnP2KyBygASJxdhejrzjMb+w==",
- "dependencies": {
- "lodash": "^4.17.21"
- },
- "peerDependencies": {
- "react": "^16.0.0 || ^17.0.0 || ^18.0.0",
- "react-dom": "^16.0.0 || ^17.0.0 || ^18.0.0"
- }
- },
"node_modules/react-router": {
- "version": "6.18.0",
- "resolved": "https://registry.npmjs.org/react-router/-/react-router-6.18.0.tgz",
- "integrity": "sha512-vk2y7Dsy8wI02eRRaRmOs9g2o+aE72YCx5q9VasT1N9v+lrdB79tIqrjMfByHiY5+6aYkH2rUa5X839nwWGPDg==",
+ "version": "6.20.0",
+ "resolved": "https://registry.npmjs.org/react-router/-/react-router-6.20.0.tgz",
+ "integrity": "sha512-pVvzsSsgUxxtuNfTHC4IxjATs10UaAtvLGVSA1tbUE4GDaOSU1Esu2xF5nWLz7KPiMuW8BJWuPFdlGYJ7/rW0w==",
"dependencies": {
- "@remix-run/router": "1.11.0"
+ "@remix-run/router": "1.13.0"
},
"engines": {
"node": ">=14.0.0"
@@ -6796,12 +6793,12 @@
}
},
"node_modules/react-router-dom": {
- "version": "6.18.0",
- "resolved": "https://registry.npmjs.org/react-router-dom/-/react-router-dom-6.18.0.tgz",
- "integrity": "sha512-Ubrue4+Ercc/BoDkFQfc6og5zRQ4A8YxSO3Knsne+eRbZ+IepAsK249XBH/XaFuOYOYr3L3r13CXTLvYt5JDjw==",
+ "version": "6.20.0",
+ "resolved": "https://registry.npmjs.org/react-router-dom/-/react-router-dom-6.20.0.tgz",
+ "integrity": "sha512-CbcKjEyiSVpA6UtCHOIYLUYn/UJfwzp55va4yEfpk7JBN3GPqWfHrdLkAvNCcpXr8QoihcDMuk0dzWZxtlB/mQ==",
"dependencies": {
- "@remix-run/router": "1.11.0",
- "react-router": "6.18.0"
+ "@remix-run/router": "1.13.0",
+ "react-router": "6.20.0"
},
"engines": {
"node": ">=14.0.0"
@@ -6867,22 +6864,21 @@
}
},
"node_modules/recharts": {
- "version": "2.9.1",
- "resolved": "https://registry.npmjs.org/recharts/-/recharts-2.9.1.tgz",
- "integrity": "sha512-GqHrQVMgDIktzNIIlhtvZnjYurr6Wy+KMSDxO1MEp3CrZZbvisUmnBojSWAZ7j8cjwhD4uRRFga2s5wcd/w9sQ==",
+ "version": "2.10.3",
+ "resolved": "https://registry.npmjs.org/recharts/-/recharts-2.10.3.tgz",
+ "integrity": "sha512-G4J96fKTZdfFQd6aQnZjo2nVNdXhp+uuLb00+cBTGLo85pChvm1+E67K3wBOHDE/77spcYb2Cy9gYWVqiZvQCg==",
"dependencies": {
- "classnames": "^2.2.5",
+ "clsx": "^2.0.0",
"eventemitter3": "^4.0.1",
"lodash": "^4.17.19",
"react-is": "^16.10.2",
- "react-resize-detector": "^8.0.4",
- "react-smooth": "^2.0.4",
+ "react-smooth": "^2.0.5",
"recharts-scale": "^0.4.4",
"tiny-invariant": "^1.3.1",
"victory-vendor": "^36.6.8"
},
"engines": {
- "node": ">=12"
+ "node": ">=14"
},
"peerDependencies": {
"prop-types": "^15.6.0",
@@ -7979,9 +7975,9 @@
}
},
"node_modules/ts-loader": {
- "version": "9.5.0",
- "resolved": "https://registry.npmjs.org/ts-loader/-/ts-loader-9.5.0.tgz",
- "integrity": "sha512-LLlB/pkB4q9mW2yLdFMnK3dEHbrBjeZTYguaaIfusyojBgAGf5kF+O6KcWqiGzWqHk0LBsoolrp4VftEURhybg==",
+ "version": "9.5.1",
+ "resolved": "https://registry.npmjs.org/ts-loader/-/ts-loader-9.5.1.tgz",
+ "integrity": "sha512-rNH3sK9kGZcH9dYzC7CewQm4NtxJTjSEVRJ2DyBZR7f8/wcta+iV44UPCXc5+nzDzivKtlzV6c9P4e+oFhDLYg==",
"dev": true,
"dependencies": {
"chalk": "^4.1.0",
@@ -8115,9 +8111,9 @@
}
},
"node_modules/typescript": {
- "version": "5.2.2",
- "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.2.2.tgz",
- "integrity": "sha512-mI4WrpHsbCIcwT9cF4FZvr80QUeKvsUsUvKDoR+X/7XHQH98xYD8YHZg7ANtz2GtZt/CBq2QJ0thkGJMHfqc1w==",
+ "version": "5.3.2",
+ "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.3.2.tgz",
+ "integrity": "sha512-6l+RyNy7oAHDfxC4FzSJcz9vnjTKxrLpDG5M2Vu4SHRVNg6xzqZp6LYSR9zjqQTu8DU/f5xwxUdADOkbrIX2gQ==",
"dev": true,
"bin": {
"tsc": "bin/tsc",
@@ -8246,9 +8242,9 @@
}
},
"node_modules/victory-vendor": {
- "version": "36.6.11",
- "resolved": "https://registry.npmjs.org/victory-vendor/-/victory-vendor-36.6.11.tgz",
- "integrity": "sha512-nT8kCiJp8dQh8g991J/R5w5eE2KnO8EAIP0xocWlh9l2okngMWglOPoMZzJvek8Q1KUc4XE/mJxTZnvOB1sTYg==",
+ "version": "36.7.0",
+ "resolved": "https://registry.npmjs.org/victory-vendor/-/victory-vendor-36.7.0.tgz",
+ "integrity": "sha512-nqYuTkLSdTTeACyXcCLbL7rl0y6jpzLPtTNGOtSnajdR+xxMxBdjMxDjfNJNlhR+ZU8vbXz+QejntcbY7h9/ZA==",
"dependencies": {
"@types/d3-array": "^3.0.3",
"@types/d3-ease": "^3.0.0",
diff --git a/package.json b/package.json
index 50d11e73..e2e67d5e 100755
--- a/package.json
+++ b/package.json
@@ -1,15 +1,16 @@
{
"name": "bento_public",
- "version": "0.16.1",
+ "version": "0.17.0",
"description": "A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of interest and search the data using limited variables at a time. This portal allows users to gain a generic understanding of the data available (secure and firewalled) without the need to access it directly. Initially, this portal facilitates the search in English language only, but the French language will be added at a later time.",
"main": "index.js",
"scripts": {
"build": "npx webpack --mode=production",
- "build-dev": "npx webpack --mode=development",
- "watch": "npx webpack --mode=development --watch",
+ "build-dev": "rm -r build/www/* && npx webpack --mode=development",
+ "watch": "rm -r build/www/* && npx webpack --mode=development --watch",
"gobuild": "./buildandrun.sh",
"lint": "npx eslint src/js",
- "lint-fix": "npx eslint --fix src/js"
+ "lint-fix": "npx eslint --fix src/js",
+ "prettier": "npx prettier --write src/js"
},
"keywords": [],
"author": "",
@@ -17,36 +18,36 @@
"dependencies": {
"@ant-design/icons": "^5.2.6",
"@reduxjs/toolkit": "^1.9.7",
- "antd": "^5.10.3",
- "axios": "^1.6.0",
- "bento-charts": "^2.4.2",
+ "antd": "^5.11.5",
+ "axios": "^1.6.2",
+ "bento-charts": "^2.5.0",
"css-loader": "^6.8.1",
"dotenv": "^16.3.1",
- "i18next": "^23.6.0",
- "i18next-browser-languagedetector": "^7.1.0",
- "i18next-http-backend": "^2.3.1",
+ "i18next": "^23.7.7",
+ "i18next-browser-languagedetector": "^7.2.0",
+ "i18next-http-backend": "^2.4.2",
"leaflet": "^1.9.4",
"less": "^4.2.0",
"react": "^18.2.0",
"react-dom": "^18.2.0",
- "react-i18next": "^13.3.1",
- "react-icons": "^4.11.0",
+ "react-i18next": "^13.5.0",
+ "react-icons": "^4.12.0",
"react-leaflet": "^4.2.1",
"react-redux": "^8.1.3",
- "react-router-dom": "^6.17.0",
- "recharts": "^2.8.0",
+ "react-router-dom": "^6.20.0",
+ "recharts": "^2.10.3",
"redux": "^4.2.1",
"redux-thunk": "^2.4.1"
},
"devDependencies": {
- "@types/react-dom": "^18.2.14",
- "@typescript-eslint/eslint-plugin": "^6.9.0",
- "@typescript-eslint/parser": "^6.9.0",
+ "@types/react-dom": "^18.2.17",
+ "@typescript-eslint/eslint-plugin": "^6.13.1",
+ "@typescript-eslint/parser": "^6.13.1",
"@webpack-cli/serve": "^2.0.4",
"copy-webpack-plugin": "^11.0.0",
"cross-env": "^7.0.3",
"dotenv-webpack": "^8.0.1",
- "eslint": "^8.50.0",
+ "eslint": "^8.54.0",
"eslint-config-prettier": "^9.0.0",
"eslint-plugin-react": "^7.33.2",
"file-loader": "^6.2.0",
@@ -54,11 +55,11 @@
"html-webpack-plugin": "^5.5.3",
"less-loader": "~11.1.3",
"nodemon": "^3.0.1",
- "prettier": "^3.0.3",
+ "prettier": "^3.1.0",
"source-map-loader": "^4.0.1",
"style-loader": "^3.3.3",
- "ts-loader": "^9.5.0",
- "typescript": "~5.2.2",
+ "ts-loader": "^9.5.1",
+ "typescript": "~5.3.2",
"webpack": "^5.89.0",
"webpack-cli": "^5.1.4",
"webpack-dev-middleware": "^6.1.1",
diff --git a/src/js/components/Beacon/BeaconQueryUi.tsx b/src/js/components/Beacon/BeaconQueryUi.tsx
index a22023f6..61d0f261 100644
--- a/src/js/components/Beacon/BeaconQueryUi.tsx
+++ b/src/js/components/Beacon/BeaconQueryUi.tsx
@@ -233,6 +233,7 @@ const BeaconQueryUi = () => {
);
const metadataInstructions =