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"sha256:e983c654fe5c02867aef4cdfce5a2fbb4a50adc0af145f70504238f18ef5e7e0" + "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0", + "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9" ], "index": "pypi", "markers": "python_version >= '3.6'", - "version": "==0.19.1" + "version": "==0.19.2" }, "json-rpc": { "hashes": [ @@ -1651,11 +1623,11 @@ }, "packaging": { "hashes": [ - "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002", - "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124" + "sha256:09abb1bccd265c01f4a3aa3f7a7db064b36514d2cba19a2f694fe6150451a759", + "sha256:c228a6dc5e932d346bc5739379109d49e8853dd8223571c7c5b55260edc0b97f" ], "markers": "python_version >= '3.8'", - "version": "==24.1" + "version": "==24.2" }, "parso": { "hashes": [ @@ -1778,11 +1750,11 @@ }, "setuptools": { "hashes": [ - "sha256:f2504966861356aa38616760c0f66568e535562374995367b4e69c7143cf6bcd", - "sha256:fba5dd4d766e97be1b1681d98712680ae8f2f26d7881245f2ce9e40714f1a686" + "sha256:5c4ccb41111392671f02bb5f8436dfc5a9a7185e80500531b133f5775c4163ef", + "sha256:87cb777c3b96d638ca02031192d40390e0ad97737e27b6b4fa831bea86f2f829" ], - "markers": "python_version >= '3.8'", - "version": "==75.3.0" + "markers": "python_version >= '3.9'", + "version": "==75.5.0" }, "sexpdata": { "hashes": [ diff --git a/app/aidbox/operations.py b/app/aidbox/operations.py index 04ac43f..cbc3420 100644 --- a/app/aidbox/operations.py +++ b/app/aidbox/operations.py @@ -2,7 +2,7 @@ from aiohttp import web -from app.converter import from_first_class_extension, to_first_class_extension +from app.converter.aidbox import from_first_class_extension, to_first_class_extension from ..sdc import ( assemble, @@ -30,7 +30,9 @@ async def assemble_op(request: AidboxSdcRequest): assembled_questionnaire_lazy = await assemble(request.fhir_client, questionnaire) assembled_questionnaire = json.loads(json.dumps(assembled_questionnaire_lazy, default=list)) if request.is_fhir: - assembled_questionnaire = from_first_class_extension(assembled_questionnaire) + assembled_questionnaire = await from_first_class_extension( + assembled_questionnaire, request.aidbox_client + ) return web.json_response(assembled_questionnaire) @@ -40,7 +42,9 @@ async def constraint_check_operation(request: AidboxSdcRequest): env = parameter_to_env(request.resource) questionnaire = ( - to_first_class_extension(env["Questionnaire"]) if request.is_fhir else env["Questionnaire"] + await to_first_class_extension(env["Questionnaire"], request.aidbox_client) + if request.is_fhir + else env["Questionnaire"] ) as_root = questionnaire.get("runOnBehalfOfRoot") client = client if as_root else get_user_sdk_client(request.request, request.client) @@ -54,7 +58,9 @@ async def get_questionnaire_context_operation(request: AidboxSdcRequest): env = parameter_to_env(request.resource) questionnaire = ( - to_first_class_extension(env["Questionnaire"]) if request.is_fhir else env["Questionnaire"] + await to_first_class_extension(env["Questionnaire"], request.aidbox_client) + if request.is_fhir + else env["Questionnaire"] ) as_root = questionnaire.get("runOnBehalfOfRoot") client = client if as_root else get_user_sdk_client(request.request, request.client) @@ -81,7 +87,7 @@ async def extract_questionnaire_operation(request: AidboxSdcRequest): elif resource["resourceType"] == "Parameters": env = parameter_to_env(request.resource) questionnaire = ( - to_first_class_extension(env["Questionnaire"]) + await to_first_class_extension(env["Questionnaire"], request.aidbox_client) if request.is_fhir else env["Questionnaire"] ) @@ -147,14 +153,18 @@ async def populate_questionnaire(request: AidboxSdcRequest): ) questionnaire = ( - to_first_class_extension(env["Questionnaire"]) if request.is_fhir else env["Questionnaire"] + await to_first_class_extension(env["Questionnaire"], request.aidbox_client) + if request.is_fhir + else env["Questionnaire"] ) as_root = questionnaire.get("runOnBehalfOfRoot") client = request.client if as_root else get_user_sdk_client(request.request, request.client) populated_resource = await populate(client, questionnaire, env) if request.is_fhir: - populated_resource = from_first_class_extension(populated_resource) + populated_resource = await from_first_class_extension( + populated_resource, request.aidbox_client + ) return web.json_response(populated_resource) @@ -172,7 +182,9 @@ async def populate_questionnaire_instance(request: AidboxSdcRequest): populated_resource = await populate(client, questionnaire, env) if request.is_fhir: - populated_resource = from_first_class_extension(populated_resource) + populated_resource = await from_first_class_extension( + populated_resource, request.aidbox_client + ) return web.json_response(populated_resource) diff --git a/app/converter/aidbox.py b/app/converter/aidbox.py new file mode 100644 index 0000000..f2c5258 --- /dev/null +++ b/app/converter/aidbox.py @@ -0,0 +1,12 @@ +async def from_first_class_extension(fce_resource, aidbox_client): + fhir_resource = await aidbox_client.execute( + "/$to-format/fhir", method="post", data=fce_resource, params=None + ) + return fhir_resource.get("resource") + + +async def to_first_class_extension(fhir_resource, aidbox_client): + fce_resource = await aidbox_client.execute( + "/$to-format/aidbox", method="post", data=fhir_resource, params=None + ) + return fce_resource.get("resource") diff --git a/tests/sdc/test_assemble.py b/tests/sdc/test_assemble.py index 3ee6127..701f1ca 100644 --- a/tests/sdc/test_assemble.py +++ b/tests/sdc/test_assemble.py @@ -552,6 +552,14 @@ async def test_assemble_sub_questionnaire_fhir(aidbox_client, safe_db): "status": "active", "resourceType": "Questionnaire", "extension": [ + { + "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-targetStructureMap", + "valueCanonical": "StructureMap/create-another-patient", + }, + { + "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-targetStructureMap", + "valueCanonical": "StructureMap/create-patient", + }, { "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext", "extension": [ @@ -560,23 +568,17 @@ async def test_assemble_sub_questionnaire_fhir(aidbox_client, safe_db): "valueCoding": { "system": "http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext", "code": "LaunchPatient", - "system": "http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext", }, }, - {"url": "type", "valueCode": "Patient"}, + { + "url": "type", + "valueCode": "Patient", + }, ], }, { - "url": "https://jira.hl7.org/browse/FHIR-22356#assembledFrom", - "valueCanonical": q.id, - }, - { - "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-targetStructureMap", - "valueCanonical": "StructureMap/create-another-patient", - }, - { - "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-targetStructureMap", - "valueCanonical": "StructureMap/create-patient", + "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-assembledFrom", + "valueCanonical": q['id'] }, ], }