From f639044f2d81cd541ef3d5bff946bd5d7acfc67e Mon Sep 17 00:00:00 2001 From: mathieulemieux Date: Wed, 30 Aug 2023 16:39:51 -0700 Subject: [PATCH] Fix threshold for structural variants --- graphkb/constants.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/graphkb/constants.py b/graphkb/constants.py index ae91b3e..9f443bc 100644 --- a/graphkb/constants.py +++ b/graphkb/constants.py @@ -175,7 +175,7 @@ def __getitem__(self, key): # For match.type_screening() [KBDEV-1056] DEFAULT_NON_STRUCTURAL_VARIANT_TYPE = 'mutation' -STRUCTURAL_VARIANT_SIZE_THRESHOLD = 50 # bp +STRUCTURAL_VARIANT_SIZE_THRESHOLD = 48 # bp STRUCTURAL_VARIANT_TYPES = [ "structural variant", "insertion",