LongStitch v1.0.5

• Release version 1.0.5
• Add parameter longmap to longstitch makefile, and document in README, help page
  • Parameter for Tigmint, which controls the preset used for minimap2 mapping

LongStitch v1.0.4

• Release version 1.0.4
• LongStitch can now accept uncompressed long reads files as input

LongStitch v1.0.3

• Release version 1.0.3
• Updated longstitch to allow usage of newly developed ntLink features
  • gap_fill=True turns on gap-filling utility in ntLink (note that raw read sequences are inserted into the filled gaps)
  • rounds can be used to run additional rounds of ntLink (default 1)
• Updated demo tests

LongStitch v1.0.2

• Release version v1.0.2
• Fix parameter a collision between ntLink and ARKS-long
  • Specify ntLink a with a_ntLink
• Add optional parameter out_prefix - specify name of soft-link to final LongStitch scaffolds (<out_prefix>.scaffolds.fa)
• Add make_links target for creating necessary soft-links if files are located outside of working directory
• Update demo
• Improve CI
• Update documentation

LongStitch v1.0.1

• Release version v1.0.1
• Update default G
• Improve user interpretation of output files with soft-links and log messages
• Add test demo files
• Improve documentation

LongStitch v1.0.0

Initial release of LongStitch: genome assembly correction and scaffolding using long reads