DESCRIPTION

Package: proteus
Type: Package
Title: Downstream analysis of the MaxQuant output
Version: 0.2.16
Depends: R (>= 3.4)
Authors@R: c(
  person("Marek", "Gierlinski", email="M.Gierlinski@dundee.ac.uk", role=c("aut", "cre")),
  person("Francesco", "Gastaldello", email="f.gastaldello@dundee.ac.uk", role=c("ctb")))
Maintainer: Marek Gierlinski <M.Gierlinski@dundee.ac.uk>
Description: Proteus is a package for downstream analysis of MaxQuant evidence data in R environment.
   It provides a variety of tools for peptide and protein aggregation, quality checks, data exploration
   and visualisation, including interactive analysis utilising Shiny framework. Proteus performs
   differential expression with limma, offering a robust treatment of missing data, with no need for
   (random) imputation.
URL: https://github.com/bartongroup/Proteus
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1
Imports:
    dplyr,
    reshape2,
    ggplot2,
    ggdendro,
    ggrepel,
    ggExtra,
    gridExtra,
    viridis,
    hexbin,
    limma,
    methods,
    stats,
    graphics,
    utils,
    parallel,
    shiny,
    DT
Suggests: testthat, knitr, rmarkdown, proteusTMT, proteusLabelFree, proteusSILAC
VignetteBuilder: knitr, rmarkdown
biocViews: Proteomics, MassSpectrometry
Language: en-GB