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I've been trying now for a while to process .avi files from miniscope recordings and I am not managing to get a proper comparibility with Ciatah. I've used ciatah for inscopix movies for a long time and everything works fine, from preprocessing to data extraction, but I cannot manage to make the preprocessing work for avi files.
The steps I have used are the following:
Preprocess: Spatial downsampling to convert .avi to h5: works.
Preprocess: motion correction, dfof.. cannot get a movie out.
I believe it could be an issue with nomenclature of the movies /1, /2 but i don't fully understand this..
Hi Biafra & Co,
I've been trying now for a while to process .avi files from miniscope recordings and I am not managing to get a proper comparibility with Ciatah. I've used ciatah for inscopix movies for a long time and everything works fine, from preprocessing to data extraction, but I cannot manage to make the preprocessing work for avi files.
The steps I have used are the following:
I believe it could be an issue with nomenclature of the movies /1, /2 but i don't fully understand this..
Could you please help me out?
Thanks
20241217_152258_preprocess.log
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