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issue processing UCLA avi movies #144

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arnauramos1 opened this issue Dec 18, 2024 · 0 comments
Open

issue processing UCLA avi movies #144

arnauramos1 opened this issue Dec 18, 2024 · 0 comments

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@arnauramos1
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Hi Biafra & Co,

I've been trying now for a while to process .avi files from miniscope recordings and I am not managing to get a proper comparibility with Ciatah. I've used ciatah for inscopix movies for a long time and everything works fine, from preprocessing to data extraction, but I cannot manage to make the preprocessing work for avi files.

The steps I have used are the following:

  1. Preprocess: Spatial downsampling to convert .avi to h5: works.
  2. Preprocess: motion correction, dfof.. cannot get a movie out.

I believe it could be an issue with nomenclature of the movies /1, /2 but i don't fully understand this..

Could you please help me out?

Thanks
20241217_152258_preprocess.log

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