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KeyError in omics-rerun tool #39

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smlchen opened this issue May 23, 2024 · 0 comments
Open

KeyError in omics-rerun tool #39

smlchen opened this issue May 23, 2024 · 0 comments

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@smlchen
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smlchen commented May 23, 2024

omics-rerun tool errors out when it tries to find the key "workflowType" in the run manifest from CloudWatch and the key does not exist.

> omics-rerun 5415434 --workflow-id 3300040
Traceback (most recent call last):
  File "/Users/sachen/Desktop/amazon-omics-tools/omics/rerun/omics-rerun", line 254, in <module>
    rqst0 = start_run_request(run)
            ^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/sachen/Desktop/amazon-omics-tools/omics/rerun/omics-rerun", line 207, in start_run_request
    if rqst["workflowType"] != "READY2RUN":
       ~~~~^^^^^^^^^^^^^^^^
KeyError: 'workflowType'
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