Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

v1.7 fails due to gfortran version issue #28

Open
rwhetten opened this issue Jan 17, 2025 · 0 comments
Open

v1.7 fails due to gfortran version issue #28

rwhetten opened this issue Jan 17, 2025 · 0 comments

Comments

@rwhetten
Copy link

I installed v1.7 from the repo 10 days ago, and completed the Jellyfish kmer-counting phase, but the runHawk script failed at the Eigenstrat smartpca step with error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory. Making a symbolic link from libgsl.so.0 pointing to libgsl.so.27.0.0 avoids that error, but then the smartpca step fails with error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory. A symbolic link from libgfortran.so.3 pointing to libgfortran.so.5.0.0 avoids that error, but instead gives version 'GFORTRAN_1.0' not found (required by /mnt/cc02/software/HAWK/supplements/EIG6.0.1-Hawk/bin/smartpca). Is it possible to re-compile the modified Eigenstrat code with a more recent version of gfortran, or is there a better way to overcome this error?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant