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Per discussion here, it would be nice to have a randomization feature native in SELFIES. Currently, we use rdkit randomization of SMILES, but it would be better to not require that extra step of converting to SMILES.
Since MolecularGraph is a directed rooted graph, it's not obvious to me how this can be done. The normal way I think is to permute the adjacency matrix, but that's not possible with a directed rooted graph.
The text was updated successfully, but these errors were encountered:
Per discussion here, it would be nice to have a randomization feature native in SELFIES. Currently, we use rdkit randomization of SMILES, but it would be better to not require that extra step of converting to SMILES.
Since
MolecularGraph
is a directed rooted graph, it's not obvious to me how this can be done. The normal way I think is to permute the adjacency matrix, but that's not possible with a directed rooted graph.The text was updated successfully, but these errors were encountered: