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R4DSXML.html
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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta name="viewport" content="width=device-width, initial-scale=1">
<link 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body {
box-sizing: border-box;
min-width: 200px;
max-width: 980px;
margin: 0 auto;
padding: 45px;
padding-top: 0px;
}
</style>
</head>
<body>
<h1 id="r4dsxml">R4DSXML</h1>
<h2 id="dataset-xml">dataset-xml</h2>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="co"># devtools::install_github("DataDrivenInc/R4DSXML/R4DSXML")</span>
<span class="kw">library</span>(R4DSXML)</code></pre></div>
<pre><code>## Loading required package: XML
## Loading required package: methods
## Loading required package: stringr</code></pre>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">define <-<span class="st"> </span><span class="kw">system.file</span>(<span class="st">"extdata"</span>, <span class="st">"SDTM"</span>,
<span class="st">"define2-0-0-example-sdtm(2013-11-09).xml"</span>,
<span class="dt">package=</span><span class="st">"R4DSXML"</span>
)
sds <-<span class="st"> </span><span class="kw">system.file</span>(<span class="st">"extdata"</span>, <span class="st">"SDTM"</span>,
<span class="st">"dm.xml"</span>,
<span class="dt">package=</span><span class="st">"R4DSXML"</span>
)
DM <-<span class="st"> </span><span class="kw">read.dataset.xml</span>(<span class="dt">dataset_xml=</span>sds, <span class="dt">define_xml=</span>define)
knitr<span class="op">::</span><span class="kw">kable</span>(DM)</code></pre></div>
<table style="width:100%;">
<colgroup>
<col width="4%"></col>
<col width="4%"></col>
<col width="8%"></col>
<col width="4%"></col>
<col width="6%"></col>
<col width="6%"></col>
<col width="4%"></col>
<col width="6%"></col>
<col width="2%"></col>
<col width="3%"></col>
<col width="2%"></col>
<col width="13%"></col>
<col width="12%"></col>
<col width="5%"></col>
<col width="10%"></col>
<col width="4%"></col>
</colgroup>
<thead>
<tr class="header">
<th align="left">STUDYID</th>
<th align="left">DOMAIN</th>
<th align="left">USUBJID</th>
<th align="left">SUBJID</th>
<th align="left">RFSTDTC</th>
<th align="left">RFENDTC</th>
<th align="left">SITEID</th>
<th align="left">BRTHDTC</th>
<th align="right">AGE</th>
<th align="left">AGEU</th>
<th align="left">SEX</th>
<th align="left">RACE</th>
<th align="left">ETHNIC</th>
<th align="left">ARMCD</th>
<th align="left">ARM</th>
<th align="left">COUNTRY</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="left">CDISC01</td>
<td align="left">DM</td>
<td align="left">CDISC01.100008</td>
<td align="left">100008</td>
<td align="left">2003-04-29</td>
<td align="left">2003-10-12</td>
<td align="left">100</td>
<td align="left">1930-08-05</td>
<td align="right">72</td>
<td align="left">YEARS</td>
<td align="left">M</td>
<td align="left">OTHER</td>
<td align="left">NOT HISPANIC OR LATINO</td>
<td align="left">WONDER10</td>
<td align="left">Miracle Drug 10 mg</td>
<td align="left">USA</td>
</tr>
<tr class="even">
<td align="left">CDISC01</td>
<td align="left">DM</td>
<td align="left">CDISC01.100014</td>
<td align="left">100014</td>
<td align="left">2003-10-15</td>
<td align="left">2004-03-29</td>
<td align="left">100</td>
<td align="left">1936-11-01</td>
<td align="right">66</td>
<td align="left">YEARS</td>
<td align="left">F</td>
<td align="left">WHITE</td>
<td align="left">NOT HISPANIC OR LATINO</td>
<td align="left">WONDER20</td>
<td align="left">Miracle Drug 20 mg</td>
<td align="left">USA</td>
</tr>
<tr class="odd">
<td align="left">CDISC01</td>
<td align="left">DM</td>
<td align="left">CDISC01.200001</td>
<td align="left">200001</td>
<td align="left">2003-09-30</td>
<td align="left">2004-02-02</td>
<td align="left">200</td>
<td align="left">1923-09-03</td>
<td align="right">80</td>
<td align="left">YEARS</td>
<td align="left">F</td>
<td align="left">MULTIPLE</td>
<td align="left">NOT HISPANIC OR LATINO</td>
<td align="left">PLACEBO</td>
<td align="left">Placebo</td>
<td align="left">USA</td>
</tr>
<tr class="even">
<td align="left">CDISC01</td>
<td align="left">DM</td>
<td align="left">CDISC01.200002</td>
<td align="left">200002</td>
<td align="left">2003-10-10</td>
<td align="left">2004-03-28</td>
<td align="left">200</td>
<td align="left">1933-07-22</td>
<td align="right">70</td>
<td align="left">YEARS</td>
<td align="left">F</td>
<td align="left">BLACK OR AFRICAN AMERICAN</td>
<td align="left">NOT HISPANIC OR LATINO</td>
<td align="left">WONDER10</td>
<td align="left">Miracle Drug 10 mg</td>
<td align="left">USA</td>
</tr>
<tr class="odd">
<td align="left">CDISC01</td>
<td align="left">DM</td>
<td align="left">CDISC01.200005</td>
<td align="left">200005</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">200</td>
<td align="left">1937-02-22</td>
<td align="right">66</td>
<td align="left">YEARS</td>
<td align="left">F</td>
<td align="left">WHITE</td>
<td align="left">NOT HISPANIC OR LATINO</td>
<td align="left">SCRNFAIL</td>
<td align="left">Screen Failure</td>
<td align="left">USA</td>
</tr>
</tbody>
</table>
</body>
</html>