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TypeError: load() missing 1 required positional argument: 'Loader' #69

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mhtran145 opened this issue Jul 16, 2022 · 2 comments
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@mhtran145
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Hi,
Could you please help me resolve this error? I have searched the web to troubleshoot it myself bu to no avail. Thank you very much in advance!
(guideseq) mtran@MF18898 ~ % guideseq.py demultiplex -m /Users/mtran/Dropbox\ (Scripps\ Research)/GUIDE-seq/ITRseq_data/CSR20A-Ele64A/run_files/Ele20A_test1_manifest.yaml
[07/16 05:46:35PM][INFO][guideseq] Loading manifest for demultiplexing...
Traceback (most recent call last):
File "/Users/mtran/opt/anaconda3/envs/guideseq/bin/guideseq.py", line 557, in
main()
File "/Users/mtran/opt/anaconda3/envs/guideseq/bin/guideseq.py", line 438, in main
g.parseManifestDemultiplex(args.manifest)
File "/Users/mtran/opt/anaconda3/envs/guideseq/bin/guideseq.py", line 97, in parseManifestDemultiplex
manifest_data = yaml.load(f)
TypeError: load() missing 1 required positional argument: 'Loader'

@mhtran145
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Hi again,
I'm using the guideseq version from Tsai Lab.

@nechamaklt11
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Hello, encountered the same problem. Here is what worked for me:
changed the yaml.load(f) in the main guideseq.py script to yaml.full_load(f).

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