From f75c44564a0b9c217f86693affe9d5d2c3046a09 Mon Sep 17 00:00:00 2001
From: Tyler Kent <tvkent@ucdavis.edu>
Date: Tue, 16 Jun 2015 16:25:20 -0700
Subject: [PATCH] typo in inbreeding arg

inbreeding for 2nd taxon in first sfs for a single region was calling the inbreeding for taxa 1
---
 scripts/ANGSD_2DSFS.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/ANGSD_2DSFS.sh b/scripts/ANGSD_2DSFS.sh
index 46c4a5f..7fb138c 100644
--- a/scripts/ANGSD_2DSFS.sh
+++ b/scripts/ANGSD_2DSFS.sh
@@ -106,7 +106,7 @@ else
         -out ${RESULTS_DIR}/${TAXON2}_Intergenic\
         -doMajorMinor ${DO_MAJORMINOR}\
         -doMaf ${DO_MAF}\
-        -indF ${TAXON_INBREEDING1}\
+        -indF ${TAXON_INBREEDING2}\
         -doSaf ${DO_SAF}\
         -uniqueOnly ${UNIQUE_ONLY}\
         -anc ${ANC_SEQ}\