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setup.cfg
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setup.cfg
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[versioneer]
VCS = git
style = pep440
versionfile_source = qsiprep/_version.py
versionfile_build = qsiprep/_version.py
tag_prefix =
parentdir_prefix =
[metadata]
url = https://github.com/pennbbl/qsiprep
author = The PennBBL developers
author_email = [email protected]
maintainer = Matt Cieslak
maintainer_email = [email protected]
description = qsiprep builds workflows for preprocessing and reconstructing q-space images
long_description = file:long_description.rst
long_description_content_type = text/x-rst; charset=UTF-8
license = 3-clause BSD
classifiers =
Development Status :: 3 - Alpha
Intended Audience :: Science/Research
Topic :: Scientific/Engineering :: Image Recognition
License :: OSI Approved :: BSD License
Programming Language :: Python :: 3.5
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
[options]
python_requires = >=3.5
install_requires =
setuptools <= 65.5.1
nibabel >=3.0.0
indexed_gzip >=0.8.8
nilearn >= 0.10.1
nipype >=1.3.1
psutil >=5.4
pybids < 0.16.1
matplotlib
svgutils <= 0.3.0
numpy >= 1.18.5
dipy >= 1.0
vtk
sentry_sdk
fury
networkx <= 2.6.3
dmri-amico == 1.5.4
seaborn
SimpleITK
pandas < 2.0.0
pyyaml
jinja2 < 3.1
xvfbwrapper
scikit-learn >=0.20.2
scikit-image
SimpleITK
pyAFQ >= 1.0.1
transforms3d
test_requires =
coverage
codecov
pytest
packages = find:
include_package_data = True
[options.exclude_package_data]
* = tests
[options.extras_require]
datalad = datalad
doc =
dipy
nbsphinx
packaging
pydot >=1.2.3
pydotplus
sphinx <=2.2.0
sphinx-argparse
sphinx_rtd_theme
sphinx_markdown_tables
recommonmark
docs =
%(doc)s
duecredit = duecredit
resmon =
sentry = sentry-sdk >=0.6.9
tests =
coverage
codecov
pytest
all =
%(datalad)s
%(doc)s
%(duecredit)s
%(sentry)s
%(tests)s
[options.package_data]
qsiprep =
VERSION
data/*.json
data/*.nii.gz
data/*.mat
data/*.cnf
data/boilerplate.bib
data/itkIdentityTransform.txt
data/FreeSurfer2dseg.txt
data/FreeSurferColorLUT.txt
data/pipelines/*.json
data/schemes/*.bval
data/schemes/*.bvec
viz/*.tpl
viz/*.json
niworkflows/data/t1w-mni_registration*.json
niworkflows/data/bold-mni_registration*.json
[options.entry_points]
console_scripts =
qsiprep=qsiprep.cli.run:main
mif2fib=qsiprep.cli.convertODFs:mif_to_fib
fib2mif=qsiprep.cli.convertODFs:fib_to_mif
qsiprep_group_report=qsiprep.cli.group_report:aggregate_reports
recon_plot=qsiprep.cli.recon_plot:recon_plot
[flake8]
max-line-length = 99
doctests = True
exclude=*build/
putty-ignore =
*/__init__.py : +F401
docs/conf.py : +E265
/^\s*\.\. _.*?: http/ : +E501