sonata.yml

name: Arbor Sonata Runner

on: [push, pull_request]

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-22.04]
        python-version: ['3.10']
    steps:
      - name: Checkout
        uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Get deps
        run: |
          pwd
          sudo apt install libhdf5-dev libmpich-dev
          pip install h5py
      - name: Build Arbor
        run: |
          cd install-arbor
          ./install-local.sh
      - name: Generate unit test input files.
        run: |
          cd test/unit/inputs
          python generate/gen_edges.py
          python generate/gen_nodes.py
          python generate/gen_spikes.py
      - name: Generate example test input files.
        run: |
          cd example/network
          python generate/gen_edges.py
          python generate/gen_nodes.py
          cd ../inputs
          python generate/gen_spikes.py
      - name: Build the sonata library, unit tests and example
        run: |
          mkdir build && cd build
          cmake .. -Darbor_DIR=/home/runner/work/arbor-sonata/arbor-sonata/install-arbor/install/lib/cmake/arbor -DCMAKE_BUILD_TYPE=release
          make -j2
      - name: Run unit test
        run: ./build/bin/unit
      - name: Run the example
        run: ./build/bin/arbata example/simulation_config.json