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Profile slow sections on Zerbini 2005 code #8

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grantdadams opened this issue May 10, 2018 · 2 comments
Open
2 tasks

Profile slow sections on Zerbini 2005 code #8

grantdadams opened this issue May 10, 2018 · 2 comments

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@grantdadams
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grantdadams commented May 10, 2018 •
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Using profile on the code Alex provided, it seems that the slow bits are

  • logistic_bisection - specifically/uniroot
  • rbind
@grantdadams
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Added profile of original function

R_humpback_SIR_profile_8_8_2018.Rprofvis.zip

@grantdadams grantdadams reopened this Aug 8, 2018
@grantdadams grantdadams mentioned this issue Aug 8, 2018
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@grantdadams
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Did profile using the testthat sir function. Slow bits seem to be LOGISTIC.BISECTION.K, LNLIKE.IAs, COMPUTING.ROI, and CALC.ANALYTIC.Q

8_21_18_Profile_with_logistic_Rcpp.zip

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