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mvae.yml
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mvae.yml
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name: ak
channels:
- r
- anaconda
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- _r-mutex=1.0.1=anacondar_1
- absl-py=1.4.0=pyhd8ed1ab_0
- aiohttp=3.8.4=py39h72bdee0_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alsa-lib=1.2.8=h166bdaf_0
- anndata=0.8.0=pyhd8ed1ab_1
- anyio=3.6.2=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py39hb9d737c_3
- arpack=3.7.0=hdefa2d7_2
- asttokens=2.2.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=22.2.0=pyh71513ae_0
- babel=2.12.1=pyhd8ed1ab_1
- backcall=0.2.0=pyhd3eb1b0_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.2=pyha770c72_0
- binutils_impl_linux-64=2.40=hf600244_0
- black=23.1.0=py39hf3d152e_0
- blas=1.0=mkl
- bleach=6.0.0=pyhd8ed1ab_0
- blinker=1.5=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py39hb9d737c_1005
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.5.7=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.0=pyhd8ed1ab_0
- cairo=1.16.0=ha61ee94_1014
- certifi=2023.5.7=pyhd8ed1ab_0
- cffi=1.15.1=py39he91dace_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- chex=0.1.6=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.2=py39h06a4308_0
- contextlib2=21.6.0=pyhd8ed1ab_0
- contourpy=1.0.7=py39h4b4f3f3_0
- cryptography=39.0.2=py39h079d5ae_0
- cudatoolkit=11.3.1=h9edb442_11
- curl=7.88.1=hdc1c0ab_0
- cycler=0.11.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- dbus=1.13.18=hb2f20db_0
- debugpy=1.6.6=py39h227be39_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dm-tree=0.1.7=py39h1832856_0
- docrep=0.3.2=pyh44b312d_0
- entrypoints=0.4=py39h06a4308_0
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fftw=3.3.10=nompi_hf0379b8_106
- flax=0.5.0=pyhd8ed1ab_0
- flit-core=3.8.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fonttools=4.39.0=py39h72bdee0_0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.3=py39hb9d737c_0
- fsspec=2023.3.0=pyhd8ed1ab_1
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- google-auth=2.16.2=pyh1a96a4e_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- graphite2=1.3.13=h58526e2_1001
- grpcio=1.52.1=py39h227be39_1
- gsl=2.7=he838d99_0
- gst-plugins-base=1.22.0=h4243ec0_2
- gstreamer=1.22.0=h25f0c4b_2
- gstreamer-orc=0.4.33=h166bdaf_0
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- h5py=3.8.0=nompi_py39h89bf01e_101
- harfbuzz=6.0.0=h8e241bc_0
- hdf5=1.14.0=nompi_hb72d44e_103
- icu=70.1=h27087fc_0
- idna=3.4=py39h06a4308_0
- igraph=0.10.3=hb9ddf80_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib-resources=5.12.0=pyhd8ed1ab_0
- importlib_metadata=6.0.0=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.21.3=pyh210e3f2_0
- ipython=8.11.0=pyh41d4057_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=8.0.4=pyhd8ed1ab_0
- jack=1.9.22=h11f4161_0
- jax=0.4.1=pyhd8ed1ab_0
- jaxlib=0.3.25=py39h6a678d5_1
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- json5=0.9.6=pyhd3eb1b0_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter=1.0.0=py39h06a4308_8
- jupyter_client=8.0.3=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.2.0=py39hf3d152e_0
- jupyter_events=0.6.3=pyhd8ed1ab_0
- jupyter_server=2.4.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab=3.5.3=py39h06a4308_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.20.0=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.5=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py39hf939315_1
- krb5=1.20.1=h81ceb04_0
- lame=3.100=h166bdaf_1003
- lcms2=2.15=hfd0df8a_0
- ld_impl_linux-64=2.40=h41732ed_0
- leidenalg=0.9.1=py39h227be39_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.0=cxx17_hcb278e6_1
- libaec=1.0.6=hcb278e6_1
- libblas=3.9.0=12_linux64_mkl
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcap=2.66=ha37c62d_0
- libcblas=3.9.0=12_linux64_mkl
- libclang=15.0.7=default_had23c3d_1
- libclang13=15.0.7=default_h3e3d535_1
- libcups=2.3.3=h36d4200_3
- libcurl=7.88.1=hdc1c0ab_0
- libdb=6.2.32=h6a678d5_1
- libdeflate=1.17=h0b41bf4_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h516909a_1
- libevent=2.1.10=h28343ad_4
- libffi=3.4.2=h7f98852_5
- libflac=1.4.2=h27087fc_0
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libgpg-error=1.46=h620e276_0
- libgrpc=1.52.1=hcf146ea_1
- libhwloc=2.9.0=hd6dc26d_0
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=12_linux64_mkl
- libllvm11=11.1.0=he0ac6c6_5
- libllvm15=15.0.7=hadd5161_0
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.5=h27cfd23_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.2=hb675445_0
- libprotobuf=3.21.12=h3eb15da_0
- libsanitizer=12.2.0=h46fd767_19
- libsndfile=1.2.0=hb75c966_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=252=h2a991cd_0
- libtiff=4.5.0=h6adf6a1_2
- libtool=2.4.7=h27087fc_0
- libudev1=253=h0b41bf4_0
- libuuid=2.32.1=h7f98852_1000
- libuv=1.44.2=h166bdaf_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.5.0=h79f4944_0
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- lightning-utilities=0.7.0=pyhd8ed1ab_1
- llvm-openmp=15.0.7=h0cdce71_0
- llvmlite=0.39.1=py39h7d9a04d_1
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- markdown=3.4.1=pyhd8ed1ab_0
- markdown-it-py=2.2.0=pyhd8ed1ab_0
- markupsafe=2.1.2=py39h72bdee0_0
- matplotlib-base=3.7.1=py39he190548_0
- matplotlib-inline=0.1.6=py39h06a4308_0
- mdurl=0.1.0=pyhd8ed1ab_0
- metis=5.1.0=h58526e2_1006
- mistune=2.0.5=pyhd8ed1ab_0
- mkl=2021.4.0=h8d4b97c_729
- mkl-service=2.4.0=py39h7e14d7c_0
- mkl_fft=1.3.1=py39h0c7bc48_1
- mkl_random=1.2.2=py39hde0f152_0
- ml-collections=0.1.1=pyhd8ed1ab_0
- mpfr=4.1.0=h9202a9a_1
- mpg123=1.31.2=hcb278e6_0
- msgpack-python=1.0.4=py39hf939315_1
- mudata=0.2.1=pyhd8ed1ab_0
- multidict=6.0.4=py39h72bdee0_0
- multipledispatch=0.6.0=py_0
- munkres=1.1.4=pyh9f0ad1d_0
- mypy_extensions=1.0.0=pyha770c72_0
- mysql-common=8.0.32=ha901b37_0
- mysql-libs=8.0.32=hd7da12d_0
- natsort=8.3.1=pyhd8ed1ab_0
- nbclassic=0.5.3=pyhb4ecaf3_3
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert=7.2.9=pyhd8ed1ab_0
- nbconvert-core=7.2.9=pyhd8ed1ab_0
- nbconvert-pandoc=7.2.9=pyhd8ed1ab_0
- nbformat=5.7.3=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=py39h06a4308_0
- networkx=3.0=pyhd8ed1ab_0
- notebook=6.5.3=pyha770c72_0
- notebook-shim=0.2.2=py39h06a4308_0
- nspr=4.35=h27087fc_0
- nss=3.88=he45b914_0
- numba=0.56.4=py39h61ddf18_0
- numpy=1.23.5=py39h14f4228_0
- numpy-base=1.23.5=py39h31eccc5_0
- numpyro=0.11.0=pyhd8ed1ab_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openjpeg=2.5.0=hfec8fc6_2
- openpyxl=3.1.1=py39h72bdee0_0
- openssl=3.1.0=hd590300_3
- opt_einsum=3.3.0=pyhd8ed1ab_1
- optax=0.1.4=pyhd8ed1ab_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py39h2ad29b5_0
- pandoc=2.19.2=h32600fe_2
- pandocfilters=1.5.0=pyhd3eb1b0_0
- pango=1.50.14=hd33c08f_0
- parso=0.8.3=pyhd3eb1b0_0
- pathspec=0.11.0=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=9.4.0=py39h2320bf1_1
- pip=23.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.1.0=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.7.0=pyhd8ed1ab_0
- prometheus_client=0.16.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.38=pyha770c72_0
- prompt_toolkit=3.0.38=hd8ed1ab_0
- psutil=5.9.4=py39hb9d737c_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pulseaudio=16.1=ha8d29e2_1
- pure_eval=0.2.2=pyhd3eb1b0_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.14.0=pyhd8ed1ab_0
- pyjwt=2.6.0=pyhd8ed1ab_0
- pynndescent=0.5.8=pyh1a96a4e_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py39h5c7b992_3
- pyqt5-sip=12.11.0=py39h227be39_3
- pyro-api=0.1.2=pyhd8ed1ab_0
- pyro-ppl=1.8.4=pyhd8ed1ab_0
- pyrsistent=0.19.3=py39h72bdee0_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.9.16=h2782a2a_0_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-igraph=0.10.4=py39hfac54ea_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.9=3_cp39
- pytorch=1.11.0=py3.9_cuda11.3_cudnn8.2.0_0
- pytorch-lightning=1.9.4=pyhd8ed1ab_0
- pytorch-mutex=1.0=cuda
- pytz=2022.7.1=pyhd8ed1ab_0
- pytz-deprecation-shim=0.1.0.post0=py39hf3d152e_3
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py39hb9d737c_5
- pyzmq=25.0.0=py39h0be026e_0
- qt-main=5.15.8=h5d23da1_6
- qtconsole=5.4.0=py39h06a4308_0
- qtpy=2.3.0=pyhd8ed1ab_0
- r-base=4.2.3=ha7d60f8_0
- r-base64enc=0.1_3=r42h76d94ec_4
- r-cli=3.3.0=r42h884c59f_0
- r-crayon=1.5.1=r42h6115d3f_0
- r-digest=0.6.29=r42h884c59f_0
- r-ellipsis=0.3.2=r42h76d94ec_0
- r-evaluate=0.15=r42h6115d3f_0
- r-fansi=1.0.3=r42h76d94ec_0
- r-fastmap=1.1.0=r42h884c59f_0
- r-glue=1.6.2=r42h76d94ec_0
- r-htmltools=0.5.2=r42h76d94ec_0
- r-irdisplay=1.1=r42h6115d3f_0
- r-irkernel=1.3=r42_0
- r-jsonlite=1.8.0=r42h76d94ec_0
- r-lifecycle=1.0.1=r42h142f84f_0
- r-pbdzmq=0.3_7=r42h884c59f_0
- r-pillar=1.7.0=r42h6115d3f_0
- r-repr=1.1.4=r42h6115d3f_0
- r-rlang=1.0.2=r42h884c59f_0
- r-utf8=1.2.2=r42h76d94ec_0
- r-uuid=1.1_0=r42h76d94ec_0
- r-vctrs=0.4.1=r42h884c59f_0
- re2=2023.02.02=hcb278e6_0
- readline=8.1.2=h0f457ee_0
- requests=2.28.2=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rich=13.3.2=pyhd8ed1ab_0
- rpy2=3.5.11=py39r42hf0d0a58_0
- rsa=4.9=pyhd8ed1ab_0
- scanpy=1.9.2=pyhd8ed1ab_0
- scikit-learn=1.2.1=py39h6a678d5_0
- scipy=1.10.0=py39h14f4228_1
- scvi-tools=0.20.3=pyhd8ed1ab_0
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- sed=4.8=he412f7d_0
- send2trash=1.8.0=pyhd3eb1b0_1
- session-info=1.0.0=pyhd8ed1ab_0
- setuptools=67.5.1=pyhd8ed1ab_0
- simplegeneric=0.8.1=py_1
- sip=6.7.7=py39h227be39_0
- six=1.16.0=pyhd3eb1b0_1
- sniffio=1.3.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=py39h06a4308_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.5=py39h2ae25f5_2
- stdlib-list=0.8.0=pyhd8ed1ab_0
- suitesparse=5.10.1=h9e50725_1
- sysroot_linux-64=2.12=he073ed8_15
- tbb=2021.8.0=hf52228f_0
- tensorboard=2.12.0=pyhd8ed1ab_0
- tensorboard-data-server=0.7.0=py39h079d5ae_0
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- terminado=0.17.1=py39h06a4308_0
- texttable=1.6.7=pyhd8ed1ab_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- toml=0.10.2=pyhd3eb1b0_0
- tomli=2.0.1=py39h06a4308_0
- toolz=0.12.0=pyhd8ed1ab_0
- torchmetrics=0.11.3=pyhd8ed1ab_0
- torchvision=0.2.2=py_3
- tornado=6.2=py39hb9d737c_1
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- tzlocal=4.3=py39hf3d152e_0
- umap-learn=0.5.3=py39hf3d152e_0
- unicodedata2=15.0.0=py39hb9d737c_0
- urllib3=1.26.14=py39h06a4308_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py39h06a4308_1
- websocket-client=1.5.1=pyhd8ed1ab_0
- werkzeug=2.2.3=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- widgetsnbextension=4.0.5=pyhd8ed1ab_0
- xcb-util=0.4.0=h166bdaf_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h166bdaf_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h166bdaf_0
- xlrd=1.2.0=pyh9f0ad1d_1
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.8.2=py39hb9d737c_0
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h3eb15da_6
- pip:
- deprecated==1.2.13
- harmonypy==0.0.9
- mofapy2==0.7.0
- muon==0.1.3
- plottable==0.1.5
- protobuf==4.22.0
- pydot==1.4.2
- scib==1.1.3
- scib-metrics==0.3.3
- scikit-misc==0.2.0
- wrapt==1.15.0
prefix: /media/gambino/students_workdir/anna/miniconda3/envs/ak