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RangeShiftR tutorials
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<a href="overview_0.html">0. General package introduction</a>
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<a href="tutorial_1.html">1. Range expansion</a>
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<a href="tutorial_2.html">2. Patch connectivity</a>
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<a href="tutorial_4.html">4. Evolution of dispersal</a>
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<h1 class="title toc-ignore">Introducing the RangeShifter R package:
RangeShiftR</h1>
<h4 class="author">Anne-Kathleen Malchow, Greta Bocedi, Steve Palmer,
Justin Travis, Damaris Zurell</h4>
</div>
<p><img src="figures/RangeShiftR_Hexsticker.png" width="20%" /></p>
<p>This website introduces the new R-package of the eco-evolutionary
modelling platform ‘RangeShifter’ <span class="citation">Greta Bocedi et
al. (2021)</span>. <em>RangeShifter</em> is an individual-based model
that integrates complex population dynamics and dispersal behavior,
includes plastic and evolutionary processes and simulates scenarios on
spatially explicit landscapes. The software provides functionality for a
wide variety of modelling applications ranging from applied questions,
where it can be parameterized for real landscapes and species to compare
alternative potential management interventions, to purely theoretical
studies of species’ eco-evolutionary dynamics and responses to different
environmental pressures.</p>
<p><img src="figures/RS_platform.png" width="70%" /></p>
<p>Originally, RangeShifter was made available as Windows-GUI and also
offered a batch mode. We here introduce the new <code>RangeShiftR</code>
package, which makes RangeShifter 2.0 <span class="citation">(Greta
Bocedi et al. 2021)</span> available from R <span
class="citation">(Malchow et al. 2021)</span>. This website provides
tutorials to learn the different features of <code>RangeShiftR</code>.
Three tutorials (1-2, and 4) are based on the examples presented in the
companion paper <span class="citation">(G. Bocedi et al. 2014)</span>.
One tutorial (3) provides additional examples on how to simulate dynamic
landscapes, a new feature of RangeShifter 2.0 <span
class="citation">Greta Bocedi et al. (2021)</span>. The tutorials will
cover some of the main features of <em>RangeShifter</em> as well as
useful functionalities of the R package for inspecting parameters and
results, and will help becoming familiar with the software.
Nevertheless, we encourage you to do more experimenting and to try
different parameters and combinations of options to become familiar with
the platform. More information on the tutorials and on
<em>RangeShifter</em> basics are available in the <a
href="https://raw.githubusercontent.com/RangeShifter/RangeShifter-software-and-documentation/master/RangeShifter_v2.0_UserManual.pdf">user
manual</a>.</p>
<p>Should you experience any problems with the package, please browse
the topics or add a topic to our <a
href="https://github.com/RangeShifter/RangeshiftR-tutorials/discussions">Forum
pages</a> or contact us under <a
href="mailto:[email protected]">[email protected]</a>.</p>
<div id="references" class="section level1 unnumbered">
<h1 class="unnumbered">References</h1>
<div id="refs" class="references csl-bib-body hanging-indent">
<div id="ref-Bocedi2014" class="csl-entry">
Bocedi, G., S. C. F. Palmer, G. Pe’er, R. K. Heikkinen, Y. G. Matsinos,
K. Watts, and J. M. J. Travis. 2014. <span>“RangeShifter: A Platform for
Modelling Spatial Eco-Evolutionary Dynamics and Species’ Responses to
Environmental Changes.”</span> <em>Methods in Ecology and Evolution</em>
5 (4): 388–96. <a
href="https://doi.org/10.1111/2041-210X.12162">https://doi.org/10.1111/2041-210X.12162</a>.
</div>
<div id="ref-Bocedi2021" class="csl-entry">
Bocedi, Greta, Stephen C. F. Palmer, Anne-Kathleen Malchow, Damaris
Zurell, Kevin Watts, and Justin M. J. Travis. 2021. <span>“RangeShifter
2.0: An Extended and Enhanced Platform for Modelling Spatial
Eco-Evolutionary Dynamics and Species’ Responses to Environmental
Changes.”</span> <em>Ecography</em> 44 (10): 1453–62. https://doi.org/<a
href="https://doi.org/10.1111/ecog.05687">https://doi.org/10.1111/ecog.05687</a>.
</div>
<div id="ref-Malchow2021" class="csl-entry">
Malchow, Anne-Kathleen, Greta Bocedi, Stephen C. F. Palmer, Justin M. J.
Travis, and Damaris Zurell. 2021. <span>“RangeShiftR: An r Package for
Individual-Based Simulation of Spatial Eco-Evolutionary Dynamics and
Species’ Responses to Environmental Changes.”</span> <em>Ecography</em>
44 (10): 1443–52. https://doi.org/<a
href="https://doi.org/10.1111/ecog.05689">https://doi.org/10.1111/ecog.05689</a>.
</div>
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<p>Anne-Kathleen Malchow, Greta Bocedi, Steve Palmer, Justin Travis & Damaris Zurell <a href="https://creativecommons.org/licenses/by-nc-nd/4.0/" >(CC BY-NC-ND 4.0)</a>. </p>
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