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index.Rmd
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---
output:
html_document:
theme: spacelab
---
Summer R 2015
=============
<a href="http://www.jhsph.edu/"><img alt = "JHSPH" align="right" src="http://www.aejaffe.com/media/jhu-bloomberg-logo.jpg" width=295 height=172/></a>
Instructor:
* [Andrew Jaffe](http://www.aejaffe.com/)
Teaching assitants:
* [Shaun Truelove](http://www.iddynamics.jhsph.edu/people.html)
* [Leonardo Collado-Torres](http://lcolladotor.github.io/)
Class:
* 8:30am - 12:00pm in room W4013
Course Info:
* Course number: 140.886.11
* Course name: Introduction to R for Public Health Researchers
# Important links
* [Syllabus](http://www.aejaffe.com/summerR_2015/docs/Syllabus-summerR-student.doc)
* [Course survey](http://jhsph.co1.qualtrics.com/SE/?SID=SV_726A1IBrXffLDEN)
# Schedule
| Day | Date | Module | Resources | Description |
|---|---|---|---|---|
| 1 | 2015-06-15 | | [Try R](http://tryr.codeschool.com/) | Finish all modules |
| 1 | 2015-06-15 | Module 1 | [lecSlides](modules/module1.html), [lecNotes](modules/module1.pdf) | Introduction to R |
| 1 | 2015-06-15 | Module 2 | [lecSlides](modules/module2.html), [lecNotes](modules/module2.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module2.R), [lab](labs/module2_lab.R), [key](labs/module2_lab_key.R)| R variables |
| 1 | 2015-06-15 | Module 3 | [lecSlides](modules/module3.html), [lecNotes](modules/module3.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module3.R), [lab](labs/module3_lab.R), [key](labs/module3_lab_key.R) | Data Classes |
|---|---|---|---|---|
| 2 | 2015-06-16 | HW2 | [code](hw/Homework2.R) | |
| 2 | 2015-06-16 | Module 4 | [lecSlides](modules/module4.html), [lecNotes](modules/module4.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module4.R), [lab](labs/module4_lab.R), [key](labs/module4_lab_review.html) | Data Input |
| 2 | 2015-06-16 | Module 5 | [lecSlides](modules/module5.html), [lecNotes](modules/module5.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module5.R), [lab](labs/module5_lab.txt) | Data I/O + Subset |
| 2 | 2015-06-16 | Module 6 | [lecSlides](modules/module6.html), [lecNotes](modules/module6.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module6.R), [lab](labs/module6_lab.R), [key](labs/module6_lab_key.R) | Manipulation |
|---|---|---|---|---|
| 3 | 2015-06-17 | Homework 3 | [HW](hw/homework3.R) | Homework |
| 3 | 2015-06-17 | Module 7 | [lecSlides](modules/module7.html), [lecNotes](modules/module7.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module7.R), [lab](labs/module7_lab.R), [key](labs/module7_lab_key.R) | Summarization |
| 3 | 2015-06-17 | Module 8 | [lecSlides](modules/module8.html), [lecNotes](modules/module8.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module8.R), [lab](labs/module8_lab.R), [key](labs/module8_lab_key.R) | Visualization |
|---|---|---|---|---|
| 4 | 2015-06-18 | Module 9 | [lecSlides](modules/module9.html), [lecNotes](modules/module9.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module9.R), [lab](labs/module9_lab.R), [key](labs/module9_lab_key.R) | Data cleaning |
| 4 | 2015-06-18 | Module 10 | [lecSlides](modules/module10.html), [lecNotes](modules/module10.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module10.R) | Lists and functions |
| 4 | 2015-06-18 | Module 11 | [lecSlides](modules/module11.html), [lecNotes](modules/module11.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module11.R) | Statistics |
|---|---|---|---|---|
| 5 | 2015-06-19 | Module 12 lecture | [lecSlides](modules/module12.html), [lecNotes](modules/module12.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/module12.R) | Reproducible research |
| 5 | 2015-06-19 | Module 12 lab | [lab](labs/module12_lab.R), [illusion R Markdown](labs/illusion.Rmd), [illusion Word](labs/illusion.docx), [part 2 Rmd](labs/module12_lab_part2.Rmd), [part 2 html](labs/module12_lab_part2.html), [key](labs/module12_lab_key.R) | Reproducible research (practical) |
| 5 | 2015-06-19 | Module 13 | [lecSlides](modules/mapping_module.html), [lecNotes](modules/mapping_module.pdf), [code](https://github.com/andrewejaffe/summerR_2015/blob/gh-pages/modules/mapping_module.R), [lab](labs/mapping_module_lab.R), [key](labs/mapping_module_labkey.R) | Mapping Tools |
|---|---|---|---|---|
| 5 | 2015-06-19 | Course survey | [Survey link](http://jhsph.co1.qualtrics.com/SE/?SID=SV_726A1IBrXffLDEN) | |
<!-- Add links to the rest of the material as we go
-->
Feel free to submit typos/errors/etc via the github repository associated with the class:
https://github.com/andrewejaffe/summerR_2015
```{r, eval = FALSE, echo = FALSE}
## Render this file:
rmarkdown::render('index.Rmd')
```
This page was last updated on `r Sys.time()` Eastern Time.