From dacc07a0ce9eda96afe13f4186cf17c167d4e7c8 Mon Sep 17 00:00:00 2001
From: Andre Chalom <andrechalom@gmail.com>
Date: Tue, 7 Jul 2015 00:32:17 -0300
Subject: [PATCH] Removed PLUE example (will add a better one on arXiv)

---
 man/PLUE.Rd | 19 -------------------
 1 file changed, 19 deletions(-)

diff --git a/man/PLUE.Rd b/man/PLUE.Rd
index 19d1da0..a82472e 100644
--- a/man/PLUE.Rd
+++ b/man/PLUE.Rd
@@ -18,29 +18,23 @@ PLUE(model=NULL, factors, N, LL, start, res.names=NULL, method = c("internal", "
 \method{print}{PLUE} (x, ...)
 \method{plot}{PLUE} (x, ...)
 }
-%- maybe also 'usage' for other objects documented here.
 \arguments{
   \item{model}{
 		The function to be run, representing the model or simulation.
-%%     ~~Describe \code{model} here~~
 }
   \item{factors}{
 		The names of the input variables (used for naming the 'data' data.frame and in plotting)
 		Either a vector of strings or a single number representing the number of factors
-%%     ~~Describe \code{factors} here~~
 }
   \item{N}{
 	  The number of samples to be generated by the Metropolis algorithm.
-%%     ~~Describe \code{N} here~~
 }
   \item{LL}{
 	  The POSITIVE Likelihood function to be used by the Metropolis algorithm. It must accept
 	  an array with length equal to the number of factors.
-%%     ~~Describe \code{LL} here~~
 }
   \item{start}{
 	  The initial point to be evaluated. Must have the same length as the number of factors.
-%%     ~~Describe \code{start} here~~
 }
 	\item{res.names}{
 		Optional: what are the names of the model results? (Used mainly for plotting)
@@ -48,11 +42,9 @@ PLUE(model=NULL, factors, N, LL, start, res.names=NULL, method = c("internal", "
   \item{method}{
 	  May be either "internal", which runs a naive and inneficient algorithm provided for test
 	  and didatic purposes, or "mcmc", which will run the \code{metrop} function from the \code{mcmc} package.
-%%     ~~Describe \code{method} here~~
 }
   \item{opts}{
 	  Further options to be passed to the Metropolis function. See the help on \code{mcmc::metrop}.
-%%     ~~Describe \code{opts} here~~
 }
 	\item{nboot}{
 		Number of bootstrap replicates for calculating the PRCC.
@@ -77,14 +69,3 @@ PLUE(model=NULL, factors, N, LL, start, res.names=NULL, method = c("internal", "
 	Further options
 }
 }
-\examples{
-	my.LL <- function(x) {
-		dbinom(10, 100, x[1], log=TRUE) 
-		+ dbinom(30, 100, x[2], log=TRUE) 
-		+ dbinom(90, 100, x[3], log=TRUE)
-	}
-	plue <- PLUE(model=function(x) x[,1]+x[,2]*x[,3], factors=3, 
-	N=10000, LL=my.LL, start=rep(0.5, 3))
-	print(plue)
-	plot(plue)
-}