diff --git a/Encina_sewage_seqs.csv b/Encina_sewage_seqs.csv index 50535b0..e50dc7b 100644 --- a/Encina_sewage_seqs.csv +++ b/Encina_sewage_seqs.csv @@ -194,53 +194,55 @@ Date,BA.1,BA.1.1.X,BA.2.X,BA.2.12.X,BA.4.X,BA.5.X,BA.2.75,BA.4.6,BQ.1.X,BQ.1.1.X 2024-05-01,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,100.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 2024-05-06,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,65.83,21.85,0.0,0.0,0.0,12.13,0.0,0.0,0.0,0.0,0.0,0.0,0.0 2024-05-09,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,47.72,0.0,52.28,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 -2024-05-13,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,99.87,0.0,0.0,0.0,0.0,0.03,0.0,0.0,0.0,0.0,0.0,0.02,0.0,0.01,0.0,0.0,0.0 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100644 --- a/SouthBay_sewage_seqs.csv +++ b/SouthBay_sewage_seqs.csv @@ -183,53 +183,55 @@ Date,BA.1,BA.1.1.X,BA.2.X,BA.2.12.X,BA.4.X,BA.5.X,BA.2.75,BA.4.6,BQ.1.X,BQ.1.1.X 2024-05-09,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,17.89,0.0,16.81,65.01,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 2024-05-12,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.42,0.0,82.93,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,16.59,0.0,0.0,0.0,0.0,0.0,0.0,0.0 2024-05-19,0.0,0.0,0.13,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,49.8,37.35,0.0,0.0,0.0,12.45,0.0,0.0,0.0,0.0,0.0 -2024-05-21,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.02,0.0,17.93,0.0,0.0,0.0,0.0,0.0,0.31,0.0,0.0,0.0,0.0,81.68,0.0,0.01,0.01,0.0,0.0 +2024-05-21,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.02,0.0,17.93,0.0,0.0,0.0,0.0,0.0,0.32,0.0,0.0,0.0,0.0,81.65,0.0,0.01,0.01,0.0,0.0 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+2024-12-15,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.04,0.0,3.2,0.0,0.0,0.0,0.0,0.0,0.03,0.0,0.0,0.0,0.0,0.01,0.0,73.27,0.95,0.0,14.99 diff --git a/rel_growth_rates.csv b/rel_growth_rates.csv index 65a4837..15bac21 100644 --- a/rel_growth_rates.csv +++ b/rel_growth_rates.csv @@ -1,7 +1,7 @@ Lineage,Estimated Advantage,Bootstrap 95% interval -XEC.X,10.1%,"[-3.85% , 39.84%]" -KP.1.1.X,6.5%,"[-0.27% , 24.23%]" -KP.2.X,6.2%,"[-5.22% , 26.12%]" -JN.1.X,4.0%,"[-3.27% , 13.44%]" -KP.3.X,-4.8%,"[-225.81% , 11.74%]" -KP.3.1.1.X,-7.7%,"[-18.15% , 2.34%]" +XEC.X,12.7%,"[2.57% , 29.35%]" +KP.2.X,2.3%,"[-6.77% , 17.45%]" +KP.3.X,2.0%,"[-6.46% , 9.62%]" +KP.1.1.X,0.8%,"[-8.91% , 17.36%]" +JN.1.X,-0.5%,"[-14.36% , 9.12%]" +KP.3.1.1.X,-9.9%,"[-20.36% , 1.95%]"