From 28f38ca9cfb68b5a5c1642d690df5556001fd067 Mon Sep 17 00:00:00 2001 From: joshuailevy Date: Tue, 13 Aug 2024 13:32:33 -0700 Subject: [PATCH] update seq outputs --- Encina_sewage_seqs.csv | 440 +++++++++--------- PointLoma_sewage_seqs.csv | 948 +++++++++++++++++++------------------- SouthBay_sewage_seqs.csv | 412 ++++++++--------- rel_growth_rates.csv | 10 +- 4 files changed, 909 insertions(+), 901 deletions(-) diff --git a/Encina_sewage_seqs.csv b/Encina_sewage_seqs.csv index 8908906..1620549 100644 --- a/Encina_sewage_seqs.csv +++ b/Encina_sewage_seqs.csv @@ -1,219 +1,221 @@ -Date,BA.1,BA.1.1.X,BA.2.X,BA.2.12.X,BA.4.X,BA.5.X,BA.2.75,BA.4.6,BQ.1.X,BQ.1.1.X,BF.7.X,XBB.X,XBB.1.5.X,XBB.1.9.X,XBB.1.16.X,XBB.2.3.X,EG.5.X,BA.2.86.X,HV.1.X,JN.1.X,JN.1.7.X,JN.1.4.X,KQ.1.X,JN.1.11.X,KP.2.X,Recombinants,Other,XDP.1,JN.1.16.X,XDP,KP.3.X,LB.1.X,KP.1.1.X,KP.3.1.1.X 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b/rel_growth_rates.csv index 01a146a..4cfb806 100644 --- a/rel_growth_rates.csv +++ b/rel_growth_rates.csv @@ -1,6 +1,6 @@ Lineage,Estimated Advantage,Bootstrap 95% interval -KP.3.1.1.X,15.1%,"[-2.56% , 38.49%]" -KP.2.X,4.1%,"[-2.74% , 13.56%]" -KP.3.X,-2.6%,"[-8.57% , 3.60%]" -KP.1.1.X,-3.0%,"[-8.33% , 1.66%]" -JN.1.X,-4.1%,"[-8.63% , 0.62%]" +KP.3.1.1.X,13.1%,"[-3.76% , 29.61%]" +KP.2.X,6.8%,"[1.68% , 15.56%]" +KP.3.X,-0.2%,"[-4.63% , 3.52%]" +KP.1.1.X,-5.2%,"[-12.89% , 0.66%]" +JN.1.X,-6.6%,"[-10.64% , -2.51%]"