From 210d818268567aac1e436cc43e05fd3bcb7a192b Mon Sep 17 00:00:00 2001 From: Lukas PM Kremer Date: Fri, 25 Oct 2024 15:36:59 +0200 Subject: [PATCH] Update tutorial.md --- docs/tutorial.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/tutorial.md b/docs/tutorial.md index 1fcc3ea..8f45dfc 100644 --- a/docs/tutorial.md +++ b/docs/tutorial.md @@ -413,8 +413,8 @@ methscan diff --threads 4 filtered_data cell_groups.csv DMRs.bed The output file `DMRs.bed` contains a list of DMRs, their genome coordinates, the methylation difference measured by the t-statistic, and an adjusted p-value for each DMR. One way to explore potential functions of these DMRs is to use tools such as [GREAT](http://great.stanford.edu). -Of course you can tweak the parameters of both `scan` and `diff` to your needs. If you are primarily interested in large stretches of differentially methylated DNA, for instance, you can increase the bandwidth of the sliding window and/or use `--bridge-gaps` to merge small VMRs/DMRs that are very close. - +Of course you can tweak the parameters of both `scan` and `diff` to your needs. If you are primarily interested in large stretches of differentially methylated DNA, for instance, you can increase the bandwidth of the sliding window and/or use `--bridge-gaps` to merge small VMRs/DMRs that are very close. The parameters of `scan` and `diff` are visually explained in this schematic: +