diff --git a/_sources/programming_notes/git.md.txt b/_sources/programming_notes/git.md.txt index b8cf213..ea50df5 100644 --- a/_sources/programming_notes/git.md.txt +++ b/_sources/programming_notes/git.md.txt @@ -1,5 +1,82 @@ # Git +## Conventional commits + +VSCode has extension `Conventional Commits` to help with following this criteria. + +Format: + +``` +type(scope): description + +body + +footer +``` + +If you have a breaking change (correlates with `major` in semantic versioning) you need to: +* Add a "!" after type/scope +* In footer, have "BREAKING CHANGE: description of change" + +Type (mandatory): + +| Type | Summary | Description | +| --- | --- | --- | +| `style` | Styles | Commit doesn't affect meaning (white-space, formatting, missing semi-colons, etc.) | +| `docs` | Documentation | Commit affects documentation only (correlates with `patch` in semantic versioning) | +| `refactor` | Code refactoring | Commit rewrites/restructures code but doesn't change expected behaviour of code | +| `perf` | Performance improvements | Commit rewrites/restructures code to improve performance (but doesn't change expected behaviour of code) | +| `improvement` | Improvement | Commit improves current implementation without adding new feature or fixing bug (would have no effect on semantic versioning) | +| `feat` | Features | New feature | Commit adds new feature (correlates with `minor` in semantic versioning) (whilst keeping backward compatability) | +| `fix` | Bug fixes | Bug fix | Commit fixes bug (correlates with `patch` in semantic versioning) | +| `test` | Test | Commit adds or amends tests | +| `build` | Builds | Commit affects build system or external dependencies (e.g. adding, removing, upgrading dependencies) | +| `ops` | Operational | Commit affects operational components (e.g. infrastructure, deployment, backup, recovery) | +| `chore` | Chores | Miscellanous commit (e.g. modifying `.gitignore`, regenerating generated code, releasing product) | +| `revert` | Reverts | Revert to old commit | +| `ci` | Continuous integrations (CI) | Commit changes CI files (e.g. Travis) | + +Scope (optional) + +Description (mandatory) +* Concise description of change in present tense +* Don't capitalise first letter, and no dot (`.`) at end + +Body (optional) +* Motivation for change and contrast with previous behaviour, in present tense +* Must have one blank line before + +Footer (optional) +* Must have one blank line before +* Should include issue ref (e.g. `Fixes: #13`). As long as you use one of GitHub's key words, it will automatically create a link. (`close`, `closes`, `closed`, `fix`, `fixes`, `fixed`, `resolve`, `resolves`, `resolved`). If for a commit in a different repository, then e.g. `Resolves: neudesic/projectcenter#22` +* Should only include BREAKING CHANGE, external links, issue references, and other meta-information + +Examples: + +``` +fix: add missing parameter to service call + +The error occurred because of . +``` + +``` +feat!: remove ticket list endpoint + +refers to JIRA-1337 + +BREAKING CHANGES: ticket enpoints no longer supports list all entites. +``` + +``` +feat(shopping cart): add the amazing button +``` + +Sources: +* +* +* +* + ## Download folder from a GitHub repository Replace `.com` in the URL with `.dev`. This will open an editor, where you can then right click the folder in the sidebar and select download. diff --git a/programming_notes/git.html b/programming_notes/git.html index 241febc..7963585 100644 --- a/programming_notes/git.html +++ b/programming_notes/git.html @@ -457,6 +457,126 @@

Git#

+
+

Conventional commits#

+

VSCode has extension Conventional Commits to help with following this criteria.

+

Format:

+
type(scope): description
+
+body
+
+footer
+
+
+

If you have a breaking change (correlates with major in semantic versioning) you need to:

+
    +

  • Add a “!” after type/scope

    • +

  • In footer, have “BREAKING CHANGE: description of change”

    • +
+

Type (mandatory):

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Type

Summary

Description

style

Styles

Commit doesn’t affect meaning (white-space, formatting, missing semi-colons, etc.)

docs

Documentation

Commit affects documentation only (correlates with patch in semantic versioning)

refactor

Code refactoring

Commit rewrites/restructures code but doesn’t change expected behaviour of code

perf

Performance improvements

Commit rewrites/restructures code to improve performance (but doesn’t change expected behaviour of code)

improvement

Improvement

Commit improves current implementation without adding new feature or fixing bug (would have no effect on semantic versioning)

feat

Features

New feature

fix

Bug fixes

Bug fix

test

Test

Commit adds or amends tests

build

Builds

Commit affects build system or external dependencies (e.g. adding, removing, upgrading dependencies)

ops

Operational

Commit affects operational components (e.g. infrastructure, deployment, backup, recovery)

chore

Chores

Miscellanous commit (e.g. modifying .gitignore, regenerating generated code, releasing product)

revert

Reverts

Revert to old commit

ci

Continuous integrations (CI)

Commit changes CI files (e.g. Travis)

+

Scope (optional)

+

Description (mandatory)

+
    +

  • Concise description of change in present tense

    • +

  • Don’t capitalise first letter, and no dot (.) at end

    • +
+

Body (optional)

+
    +

  • Motivation for change and contrast with previous behaviour, in present tense

    • +

  • Must have one blank line before

    • +
+

Footer (optional)

+
    +

  • Must have one blank line before

    • +

  • Should include issue ref (e.g. Fixes: #13). As long as you use one of GitHub’s key words, it will automatically create a link. (close, closes, closed, fix, fixes, fixed, resolve, resolves, resolved). If for a commit in a different repository, then e.g. Resolves: neudesic/projectcenter#22

    • +

  • Should only include BREAKING CHANGE, external links, issue references, and other meta-information

    • +
+

Examples:

+
fix: add missing parameter to service call
+
+The error occurred because of <reasons>.
+
+
+
feat!: remove ticket list endpoint
+
+refers to JIRA-1337
+
+BREAKING CHANGES: ticket enpoints no longer supports list all entites.
+
+
+
feat(shopping cart): add the amazing button
+
+
+

Sources:

+ +

Download folder from a GitHub repository#

Replace .com in the URL with .dev. This will open an editor, where you can then right click the folder in the sidebar and select download.

@@ -634,6 +754,7 @@

Public v.s. private repositories
    +
  • Conventional commits
  • Download folder from a GitHub repository
  • Create and delete repositories
  • Add, rename, remove, push
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[3, 4], "2022": [3, 4, 5, 6, 7, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 22], "dentist": 3, "appoint": [3, 5], "10": [3, 7, 9, 11, 13, 18, 21, 22, 30, 31, 32, 33, 36], "30": [3, 9, 17, 22, 33], "deduc": 3, "leav": [3, 24, 36], "9": [3, 9, 13, 18, 32, 33], "induct": 3, "lung": [3, 5], "cancer": 3, "four": [3, 4, 8, 13, 36], "six": [3, 31], "cowork": 3, "same": [3, 4, 5, 6, 7, 9, 12, 13, 15, 17, 18, 19, 21, 22, 24, 28, 30, 31, 32, 33, 34, 36], "sandwich": [3, 13], "induc": [3, 5, 13], "abduct": 3, "implicit": 3, "explicit": [3, 4], "appeal": [3, 18], "consider": [3, 19, 22], "investig": [3, 4, 9, 11, 24], "crime": 3, "scene": 3, "exposur": [4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 22], "framework": [4, 9, 17, 22], "state": [4, 5, 17, 18, 32, 33, 34, 36, 37], "thought": [4, 17, 22], "contrast": [4, 5, 9], "notat": [4, 5], "acycl": [4, 22], "dag": [4, 11, 12], "expert": [4, 5, 27], "knowledg": [4, 5, 10, 21, 27], "depict": 4, "node": 4, "arrow": 4, "illustr": [4, 5, 9, 17, 18, 32, 33], "indic": [4, 9, 22, 36], "expect": [4, 5, 10, 15, 17, 18, 19, 22, 31, 32, 33, 36], "hypothesis": 4, "among": [4, 5, 6, 7, 9, 17, 18], "criteria": [4, 5, 7, 9], "met": [4, 9, 13, 36], "visualis": [4, 33, 36], "translat": 4, "statement": [4, 22, 33], "assess": [4, 9, 11, 13, 14, 36, 37], "fit": [4, 5, 8, 13, 14, 15, 17, 18, 33, 35, 36], "improv": [4, 9, 13, 16, 27], "modif": [4, 5, 11, 22, 33], "research": [4, 5, 9, 17, 21], "leder": [4, 5, 7, 22], "come": [4, 10, 13, 15, 32, 36], "talk": 4, "defin": [4, 5, 6, 8, 9, 10, 11, 16, 17, 20, 22, 25, 31, 33, 36], "pioneer": 4, "strength": 4, "limit": [4, 5, 22, 32, 33, 36, 37], "1923": 4, "neyman": 4, "1973": 4, "lewi": 4, "philosophi": 4, "1974": 4, "rubin": [4, 8, 11], "1986": [4, 15, 16], "robin": [4, 5, 11, 12, 15, 16, 22], "epidemiologi": [4, 22], "articul": 4, "assumpt": [4, 5, 7, 8, 10, 12, 14, 16, 18, 36, 37], "conveni": [4, 32, 33], "complex": [4, 9, 17, 22, 36, 37], "1921": 4, "wright": 4, "genet": [4, 5, 17], "1988": 4, "comput": [4, 11, 12, 22, 36, 37], "1993": 4, "spirt": 4, "glymour": 4, "schein": 4, "difficult": [4, 5, 7, 9], "parametr": [4, 15, 22], "form": [4, 9, 13, 20, 31, 33], "underli": [4, 5, 6, 13, 19], "popul": [4, 5, 7, 9, 11, 12, 13, 14, 15, 17, 19, 20, 22, 35, 37], "challeng": [4, 7], "predefin": [4, 33], "1943": 4, "haavelmo": 4, "econometr": [4, 17], "1975": [4, 5], "duncan": 4, "social": [4, 5], "2000": 4, "simultan": [4, 15, 17, 31], "espeic": 4, "abstract": 4, "concept": [4, 5, 36], "bridg": [4, 37], "counterfactur": 4, "operationalis": 4, "danger": 4, "confus": [4, 17], "equival": [4, 6, 13, 15, 16], "igelstr\u00f6m": [4, 5, 6, 7, 14, 15, 16, 17, 18, 19, 20, 22], "idea": [4, 9, 17], "describ": [4, 5, 9, 10, 12, 13, 14, 15, 22], "know": [4, 17, 18, 22, 33, 36], "ingest": 4, "poison": 4, "kill": [4, 33], "john": [4, 29], "he": [4, 18, 20, 22, 33], "live": [4, 9, 31, 36], "never": [4, 5, 6, 9, 14, 18, 30, 36], "expos": [4, 6, 7, 10, 12, 13, 14, 20, 22, 30], "unexpos": [4, 6, 7, 10, 12, 13, 14, 16, 20], "circumst": [4, 6, 22], "look": [4, 5, 10, 17, 18, 22, 32, 33, 36], "treat": [4, 5, 6, 8, 9, 10, 12, 14, 15, 17, 20, 21, 22, 37], "ben": 4, "implicitli": 4, "word": [4, 5, 6, 15, 16, 22, 33], "exchang": [4, 7, 10, 11, 12, 13, 14, 16, 20, 22], "obtain": [4, 5, 9, 13, 33], "achiev": [4, 6, 7, 9, 13, 14, 22, 33, 37], "spiegelman": 4, "2017": [4, 13, 14, 15, 16, 17, 22, 34], "taken": [4, 17, 22], "sever": [4, 5, 9, 11, 13, 14, 17, 22, 36, 37], "manipul": [4, 18], "although": [4, 5, 9, 13, 14, 17, 18, 21, 22, 30, 31, 33, 36], "ag": [4, 6, 9, 11, 17], "race": [4, 5], "gender": [4, 5, 17], "cleanli": 4, "factual": 4, "given": [4, 5, 6, 8, 9, 10, 12, 13, 14, 15, 16, 17, 22, 33, 36], "binari": [4, 7, 12, 13, 34, 36], "give": [4, 5, 7, 15, 17, 24, 28, 33], "rise": 4, "doom": 4, "experienc": [4, 12, 18], "regardless": [4, 5, 7, 9, 18], "otherwis": [4, 5, 9, 18, 21, 22, 30, 33], "prevent": [4, 5, 9, 28, 33], "immun": 4, "statu": [4, 5, 6, 8, 9, 13, 14, 17, 18, 22, 24], "term": [4, 5, 6, 9, 11, 13, 14, 15, 17, 18, 19, 37], "0": [4, 5, 9, 13, 15, 17, 18, 24, 31, 32, 33], "continu": [4, 5, 7, 11, 12, 13, 14, 16, 18, 20, 22, 31, 33], "condit": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21, 33, 37], "constant": [4, 22, 33], "compos": [4, 6], "unidirect": 4, "repres": [4, 5, 11, 12, 13, 20, 33, 36, 37], "prior": [4, 5, 13, 16, 17, 21, 22, 31, 33], "itself": [4, 5, 16, 17], "back": [4, 5, 7, 10, 17, 18, 22, 24, 34], "harvardx": [4, 5, 6, 11, 12, 22], "ph559x": [4, 5, 6, 11, 12, 22], "exact": [4, 15, 32], "accur": [4, 36], "represent": 4, "world": [4, 5, 6, 18, 29, 36, 37], "sure": [4, 24, 32], "precis": [4, 9, 10, 13, 15, 17, 18, 31, 33], "effici": [4, 9, 33, 36], "write": [4, 28, 29, 31, 33, 34, 35], "analyt": [4, 16, 37], "feel": 4, "discomfort": 4, "basi": [4, 17, 22], "advantag": [4, 9, 13, 22, 35], "determin": [4, 5, 9, 13, 16, 17, 18, 20, 21, 22, 32, 36], "whether": [4, 5, 6, 7, 9, 11, 16, 17, 19, 22, 33, 36], "interest": [4, 5, 9, 10, 11, 15, 17, 20, 22], "avail": [4, 5, 7, 12, 20, 30, 33, 37], "clarifi": [4, 37], "question": [4, 5, 20, 22, 34, 36], "subsequ": [4, 9, 13, 33, 36], "first": [4, 5, 9, 15, 16, 17, 18, 20, 22, 29, 33, 35, 36], "specifi": [4, 5, 7, 9, 13, 16, 17, 21, 22, 30, 33, 35], "expertis": 4, "graphic": [4, 14], "By": [4, 9, 22, 33, 34], "rewritten": 4, "manifest": [4, 31], "latent": 4, "exogen": [4, 17, 20], "themselv": [4, 5], "affect": [4, 5, 6, 8, 10, 11, 14, 16, 17, 22, 24, 33, 36], "endogen": [4, 17], "bidrect": 4, "isol": [4, 5], "condition": [4, 15], "oval": 4, "rectangl": 4, "head": [4, 17, 24, 33], "madhanagop": 4, "amrhein": 4, "2019": [4, 5, 22], "scm": 4, "aid": 4, "confirm": 4, "phenomenon": [4, 5, 17], "meet": [4, 7, 9, 10, 17, 18, 36, 37], "realiti": 4, "gropu": 4, "subset": [4, 6, 7, 11, 12, 13], "must": [4, 5, 17, 36], "parent": [4, 5, 32, 34], "ancestor": [4, 5], "soccer": 4, "heatstrok": 4, "conditoin": 4, "via": [4, 5, 17, 32, 33, 34], "dehydr": 4, "heat": 4, "stroke": [4, 5, 7, 9, 18], "door": [4, 5, 10, 18], "matrix": [4, 21, 33], "fundament": 4, "unit": [4, 13, 15, 16, 18, 33, 35], "paramet": [4, 13, 14, 16, 17, 22, 32, 33, 36], "too": [4, 6, 7, 13, 24, 36, 37], "uniqu": [4, 5, 17, 21, 31, 33], "element": [4, 9], "greater": [4, 22, 33], "degre": [4, 5, 15], "freedom": 4, "hypothesi": [4, 5, 18, 28], "test": [4, 5, 6, 9, 17, 21, 30, 36], "total": [4, 5, 9, 10, 15, 24, 36], "lower": [4, 9, 13, 17, 33, 36], "coeffici": [4, 16, 17], "zero": [4, 9, 16, 33], "allow": [4, 5, 6, 7, 9, 10, 11, 13, 14, 30, 32, 33, 36], "correspond": [4, 9], "constrain": [4, 11], "common": [5, 6, 7, 11, 13, 14, 17, 22, 29, 30, 32], "lie": 5, "inclus": [5, 7, 9, 10, 22], "size": [5, 7, 9, 11, 13, 14, 17, 19, 32, 33, 36], "whose": [5, 10, 17], "block": [5, 10, 22, 24], "earlier": [5, 9, 16, 17, 34, 35], "later": [5, 16, 17, 18, 31, 33], "fallaci": [5, 22], "particular": [5, 6, 7, 9, 11, 13, 24], "primari": 5, "iv": [5, 17, 18, 19, 22], "letter": 5, "highlight": [5, 22], "colour": 5, "box": [5, 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"Clone-censor-weight design": [[9, "clone-censor-weight-design"]], "Sequential trial design": [[9, "sequential-trial-design"]], "Multivariable regression": [[10, "multivariable-regression"]], "All possible confounders": [[10, "all-possible-confounders"]], "Data-driven selection of confounders": [[10, "data-driven-selection-of-confounders"]], "Stratification": [[11, "stratification"]], "Simple example": [[11, "simple-example"]], "Mantel-Haenszel Formula": [[11, "mantel-haenszel-formula"]], "Stratification on the propensity score": [[11, "stratification-on-the-propensity-score"]], "Limitations of stratification": [[11, "limitations-of-stratification"]], "Matching": [[12, "matching"]], "Matching methods": [[12, "matching-methods"]], "Limitations": [[12, "limitations"], [17, "limitations"]], "Inverse probability of treatment weighting (IPTW) with baseline covariates": [[13, "inverse-probability-of-treatment-weighting-iptw-with-baseline-covariates"]], "Example": [[13, "example"]], "Strengths and limitations": [[13, "strengths-and-limitations"], [14, "strengths-and-limitations"]], "IPTW variants": [[13, "iptw-variants"]], "Weight stabilisation": [[13, "weight-stabilisation"]], "Propensity score trimming and truncation": [[13, "propensity-score-trimming-and-truncation"]], "Augmented inverse propensity weighting (AIPW)": [[13, "augmented-inverse-propensity-weighting-aipw"]], "Excluding treated individuals": [[13, "excluding-treated-individuals"]], "Marginal structural models (MSM)": [[14, "marginal-structural-models-msm"]], "Method": [[14, "method"]], "Step 1. Weight observations using IPTW": [[14, "step-1-weight-observations-using-iptw"]], "Step 2. Use weights in model to estimate treatment-outcome association": [[14, "step-2-use-weights-in-model-to-estimate-treatment-outcome-association"]], "G-computation": [[15, "g-computation"]], "Terminology": [[15, "terminology"]], "About the method": [[15, "about-the-method"]], "How does this method enable us to deal with treatment-dependent confounding?": [[15, "how-does-this-method-enable-us-to-deal-with-treatment-dependent-confounding"]], "G-computation v.s. IPTW": [[15, "g-computation-v-s-iptw"]], "G-estimation of structural nested models": [[16, "g-estimation-of-structural-nested-models"]], "G-computation + IPTW": [[16, "g-computation-iptw"]], "Instrumental variables": [[17, "instrumental-variables"]], "What is an instrumental variable?": [[17, "what-is-an-instrumental-variable"]], "Two-stage least squares (2SLS)": [[17, "two-stage-least-squares-2sls"]], "Assumptions of instrumental variable analysis": [[17, "assumptions-of-instrumental-variable-analysis"]], "Non-parametric instrumental variable methods": [[17, "non-parametric-instrumental-variable-methods"]], "Examples": [[17, "examples"], [36, "examples"]], "Example 1: Mendelian randomisation": [[17, "example-1-mendelian-randomisation"]], "Example 2: Effect of intensive treatment on mortality in patients with acute myocardial infarction": [[17, "example-2-effect-of-intensive-treatment-on-mortality-in-patients-with-acute-myocardial-infarction"]], "Example 3: caesarean section": [[17, "example-3-caesarean-section"]], "Python example": [[17, "python-example"]], "Set-up (import packages and data)": [[17, "set-up-import-packages-and-data"]], "Traditional OLS estimate": [[17, "traditional-ols-estimate"]], "Quarter of birth": [[17, "quarter-of-birth"]], "Estimating the average causal effect": [[17, "estimating-the-average-causal-effect"]], "Option 1. Dividing reduced form by 1st stage.": [[17, "option-1-dividing-reduced-form-by-1st-stage"]], "Option 2. 2 stages least squares (2SLS)": [[17, "option-2-2-stages-least-squares-2sls"]], "Option 3. Automated 2SLS": [[17, "option-3-automated-2sls"]], "Regression discontinuity (RD)": [[18, "regression-discontinuity-rd"]], "How does RDD work?": [[18, "how-does-rdd-work"]], "Sharp v.s. fuzzy RDD": [[18, "sharp-v-s-fuzzy-rdd"]], "Applying to our work": [[18, "applying-to-our-work"]], "Interrupted time series (ITS)": [[19, "interrupted-time-series-its"]], "Things to consider": [[19, "things-to-consider"]], "Difference in differences (DiD)": [[20, "difference-in-differences-did"]], "Example: John Snow and cholera": [[20, "example-john-snow-and-cholera"]], "Other methods": [[21, "other-methods"]], "More on: Synthetic control": [[21, "more-on-synthetic-control"]], "Comparison to difference-in-differences": [[21, "comparison-to-difference-in-differences"]], "Overview": [[22, "overview"]], "Identifying the focus of the research": [[22, "identifying-the-focus-of-the-research"]], "Methods for causal effect estimation using observational data": [[22, "methods-for-causal-effect-estimation-using-observational-data"]], "Comparing methods": [[22, "comparing-methods"]], "Treatment-confounder feedback and unobserved confounding": [[22, "treatment-confounder-feedback-and-unobserved-confounding"]], "Causal estimand & conditional/marginal effects": [[22, "causal-estimand-conditional-marginal-effects"]], "What methods are typically used?": [[22, "what-methods-are-typically-used"]], "Reporting guidelines": [[22, "reporting-guidelines"]], "Resources": [[22, "resources"], [33, "resources"]], "Amy Heather\u2019s Notes": [[23, "amy-heather-s-notes"]], "Git": [[24, "git"]], "Conventional commits": [[24, "conventional-commits"]], "Download folder from a GitHub repository": [[24, "download-folder-from-a-github-repository"]], "Create and delete repositories": [[24, "create-and-delete-repositories"]], "Add, rename, remove, push": [[24, "add-rename-remove-push"]], "Undo git command": [[24, "undo-git-command"]], "Track large file": [[24, "track-large-file"]], "Tags": [[24, "tags"]], "Git fetch v.s. git pull": [[24, "git-fetch-v-s-git-pull"]], "Branches and versions": [[24, "branches-and-versions"]], "Git stash": [[24, "git-stash"]], "Git fork": [[24, "git-fork"]], "Commits": [[24, "commits"]], "Storing credentials": [[24, "storing-credentials"]], "Public v.s. private repositories": [[24, "public-v-s-private-repositories"]], "Latex": [[25, "latex"]], "Unicode error": [[25, "unicode-error"]], "URL": [[25, "url"]], "Linux": [[26, "linux"]], "Machine learning": [[27, "machine-learning"]], "Causality": [[27, "causality"]], "Open Science": [[28, "open-science"]], "Open Science Framework (OSF)": [[28, "open-science-framework-osf"]], "Project": [[28, "project"]], "Registrations": [[28, "registrations"]], "Other": [[29, "other"]], "draw.io": [[29, "draw-io"]], "Zotero": [[29, "zotero"]], "Citation.cff": [[29, "citation-cff"]], "Changelog": [[29, "changelog"]], "Python environments": [[30, "python-environments"]], "Conda": [[30, "conda"]], "Virtualenv": [[30, "virtualenv"], [30, "id1"]], "Virtualenvwrapper": [[30, "virtualenvwrapper"]], "Docker": [[30, "docker"]], "General Python Stuff": [[31, "general-python-stuff"]], "Using VS Code": [[31, "using-vs-code"]], "Type hinting in VS Code with Pylance": [[31, "type-hinting-in-vs-code-with-pylance"]], "Violin plot": [[31, "violin-plot"]], "Jupyter lab": [[31, "jupyter-lab"]], "Comparing two dataframes": [[31, "comparing-two-dataframes"]], "Linting": [[31, "linting"], [34, "linting"]], "Compare dataframes": [[31, "compare-dataframes"]], "Package": [[31, "package"]], "Unit testing": [[31, "unit-testing"]], "Colour scales": [[31, "colour-scales"]], "Save HTML to csv and then import again and convert to PDF (this is not ideal tbh)": [[31, "save-html-to-csv-and-then-import-again-and-convert-to-pdf-this-is-not-ideal-tbh"]], "Seeds": [[32, "seeds"]], "Packages": [[32, "packages"], [35, "packages"]], "Generating a random number": [[32, "generating-a-random-number"]], "What is a pseudorandom number generator?": [[32, "what-is-a-pseudorandom-number-generator"]], "Global random number generator": [[32, "global-random-number-generator"]], "Create a generator object and pass it around": [[32, "create-a-generator-object-and-pass-it-around"]], "Parallel random number generation": [[32, "parallel-random-number-generation"]], "SeedSequence spawning": [[32, "seedsequence-spawning"]], "Creating individual random number streams for sampling": [[32, "creating-individual-random-number-streams-for-sampling"]], "Legacy Random Generation": [[32, "legacy-random-generation"]], "DES using SimPy": [[33, "des-using-simpy"]], "Basic model structure (using object-oriented programming)": [[33, "basic-model-structure-using-object-oriented-programming"]], "Alternatives layouts": [[33, "alternatives-layouts"]], "Producing entity arrivals (using generator functions)": [[33, "producing-entity-arrivals-using-generator-functions"]], "Requesting multiple resources simultaneously": [[33, "requesting-multiple-resources-simultaneously"]], "Priority queue": [[33, "priority-queue"]], "Resource unavailability": [[33, "resource-unavailability"]], "Sampling from distributions": [[33, "sampling-from-distributions"]], "Variable arrival rates (i.e. time-dependent arrivals)": [[33, "variable-arrival-rates-i-e-time-dependent-arrivals"]], "Tracking resource utilisation": [[33, "tracking-resource-utilisation"]], "Method 1. Simple average across the run": [[33, "method-1-simple-average-across-the-run"]], "Method 2. Interval audit process": [[33, "method-2-interval-audit-process"]], "Testing a large number of scenarios": [[33, "testing-a-large-number-of-scenarios"]], "Determining how many replications to run.": [[33, "determining-how-many-replications-to-run"]], "Appointment booking (i.e. scheduling)": [[33, "appointment-booking-i-e-scheduling"]], "Parallelisation": [[33, "parallelisation"]], "Input modelling": [[33, "input-modelling"]], "Viewing results from the model": [[33, "viewing-results-from-the-model"]], "General": [[34, "general"]], "Function setting default inputs": [[34, "function-setting-default-inputs"]], "Function returning multiple objects": [[34, "function-returning-multiple-objects"]], "Reproducible environment: renv": [[34, "reproducible-environment-renv"]], "Reproducible environment: binder": [[34, "reproducible-environment-binder"]], "Packages: set up": [[35, "packages-set-up"]], "Packages: adding functions and testing": [[35, "packages-adding-functions-and-testing"]], "Packages: using other libraries": [[35, "packages-using-other-libraries"]], "Packages: loading and checking": [[35, "packages-loading-and-checking"]], "Packages - Vignettes:": [[35, "packages-vignettes"]], "Packages - Create GitHub pages website:": [[35, "packages-create-github-pages-website"]], "Discrete event simulation (DES)": [[36, "discrete-event-simulation-des"]], "What is DES?": [[36, "what-is-des"]], "Components of a DES": [[36, "components-of-a-des"]], "DES Inputs": [[36, "des-inputs"]], "DES Outputs": [[36, "des-outputs"]], "Initialisation bias": [[36, "initialisation-bias"]], "Method 1. Inspect time series": [[36, "method-1-inspect-time-series"]], "Method 2. Set initial conditions manually": [[36, "method-2-set-initial-conditions-manually"]], "Queue characteristics": [[36, "queue-characteristics"]], "Appointment booking": [[36, "appointment-booking"]], "Reproducibility": [[36, "reproducibility"]], "Evaluating model performance": [[36, "evaluating-model-performance"]], "Metrics": [[36, "metrics"]], "Scenario analysis": [[36, "scenario-analysis"]], "Replications": [[36, "replications"]], "Model verification and validation": [[36, "model-verification-and-validation"]], "Packages and software for discrete event simulation": [[36, "packages-and-software-for-discrete-event-simulation"]], "Simulation": [[37, "simulation"], [37, "id1"]], "Characteristics of a simulation": [[37, "characteristics-of-a-simulation"]], "Stochastic or deterministic": [[37, "stochastic-or-deterministic"]], "Static or dynamic": [[37, "static-or-dynamic"]], "Discrete or continuous": [[37, "discrete-or-continuous"]], "Types of simulation models": [[37, "types-of-simulation-models"]], "Advice on modelling care pathways": [[37, "advice-on-modelling-care-pathways"]]}, "indexentries": {}}) \ No newline at end of file