From 166810e02d5d6ca5a8d369ab504a5d7f460f32c5 Mon Sep 17 00:00:00 2001
From: Recursion Ninja <github@recursion.ninja>
Date: Wed, 28 Aug 2024 13:41:00 -0400
Subject: [PATCH] Updating integration test configuration

---
 .github/workflows/integration-test-suite.yaml |   2 +-
 config/cabal.project.integration              | 119 ++++++++++++++++++
 2 files changed, 120 insertions(+), 1 deletion(-)
 create mode 100644 config/cabal.project.integration

diff --git a/.github/workflows/integration-test-suite.yaml b/.github/workflows/integration-test-suite.yaml
index 12157da0b..bc79633e6 100644
--- a/.github/workflows/integration-test-suite.yaml
+++ b/.github/workflows/integration-test-suite.yaml
@@ -11,7 +11,7 @@ defaults:
     shell: bash
 
 env:
-  PROJECTFILE: --project-file=cfg/cabal.project.integration
+  PROJECTFILE: --project-file=config/cabal.project.integration
   TESTDETAILS: --test-show-details=streaming
   TESTOPTIONS: --test-options="--timeout=30s"
   THISMAINEXE: PhyGraph:phyg
diff --git a/config/cabal.project.integration b/config/cabal.project.integration
new file mode 100644
index 000000000..02762bc14
--- /dev/null
+++ b/config/cabal.project.integration
@@ -0,0 +1,119 @@
+---------------------------------------------------------------------------------
+-- Domain of PHAGE packages
+--   * PHAGE-integration-tests
+---------------------------------------------------------------------------------
+
+packages:
+    pkg/PHAGE-integration-tests
+    pkg/PhyGraph
+    pkg/PhyloLib
+    pkg/*/*.cabal
+
+with-compiler: ghc-9.2.4
+
+
+---------------------------------------------------------------------------------
+-- Output paths
+--
+-- Place build output(s) in more accessible locations. Binaries should go in `bin`
+-- and log files of the build/benchmarks/tests should go in `log`.
+---------------------------------------------------------------------------------
+
+-- datadir:          ./data
+-- docdir:           ./doc
+-- htmldir:          ./doc/html
+symlink-bindir:   ./bin
+installdir:       ./bin
+logs-dir:         ./log
+install-method:   copy
+overwrite-policy: always
+
+
+---------------------------------------------------------------------------------
+-- Build metadata flags
+--
+-- Sensible alterations from the defaults to improve the build experience during
+-- iterative development. Simultaneously, does not hinder release builds.
+---------------------------------------------------------------------------------
+
+haddock-html:             True
+haddock-tests:            True
+haddock-benchmarks:       True
+haddock-internal:         True
+haddock-hyperlink-source: True
+jobs:                     $ncpus
+keep-going:               True
+minimize-conflict-set:    True
+
+
+---------------------------------------------------------------------------------
+-- Package flags (useful defaults)
+--
+-- Instruct all transative dependencies to be built *with both* optimization and
+-- profiling enabled. This reduces rebuilds when debugging while not sacraficing
+-- undue execution speed from imported code.
+--
+-- Contrastingly, *disable both* optimization and profiling when building the
+-- current package's codebase. This improves the frequent recompilation speed
+-- during iterative development.
+--
+-- Finally, enable all warnings and then prune out the undesirable ones. Having
+-- the large litany of warnings enabled forces pre-emptive compatibility with
+-- future breaking changes as well as improving overall code quality.
+---------------------------------------------------------------------------------
+
+-- Applies to *all* packages, not just dependencies...
+package *
+    benchmarks:        False
+    documentation:     False
+    tests:             False
+    optimization: 2
+
+
+package PHAGE-integration-tests
+    benchmarks:        False
+    documentation:     False
+    tests:             True
+    executable-static: False
+    optimization: 2
+    flags: -SingleThreaded
+
+
+package PhyGraph
+    benchmarks:        False
+    documentation:     False
+    tests:             False
+    executable-static: False
+    optimization: 2
+    flags: -SingleThreaded
+
+
+---------------------------------------------------------------------------------
+-- Dependency specifications
+--
+-- Always allow a newer version of libraries which are tightly coupled to the GHC
+-- compiler version. This allows the project to build with newer versions of the
+-- compiler without having to tediously tinker with dependencies, both direct and
+-- transitive.
+--
+-- Always allow a newer version of libraries which have had a major release due
+-- to a security or performance patch. Add a `preference` indicating the desire
+-- to use a version greater than or equal to the patch.
+---------------------------------------------------------------------------------
+
+allow-newer:
+    aeson,
+    bytestring,
+    text,
+
+preferences:
+    aeson          >= 2.0.0,
+    bytestring     >= 0.11.3,
+    filepath       >= 1.4.100.0,
+    mtl            >= 2.3,
+    text           >= 2.0,
+    
+source-repository-package
+  type: git
+  location: https://github.com/recursion-ninja/bv-little
+  tag: 4541d78545933f450af5c241a83e4b07a0e69dca