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Excluding sites #189

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fluttercork opened this issue Jul 30, 2024 · 2 comments
Open

Excluding sites #189

fluttercork opened this issue Jul 30, 2024 · 2 comments

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@fluttercork
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Would it be possible to have raxml-ng recognize site weights of 0 (or, alternatively, to implement the exclude file of RAxML?), which would be a quick and easy way for the user to exclude sites from the analysis?

When working with MSAs with multiple partitions, I often want to exclude one or more partitions, which could be more easily done using a weight / exclusion file than rebuilding the MSA each and every time.

Thanks,

Olaf

@liamxg
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liamxg commented Aug 1, 2024

Dear @fluttercork,
Good idea!

@amkozlov
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amkozlov commented Aug 8, 2024

Dear Olaf,

thanks for the suggestion, I will put in on my list

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