docker

nekRS Docker Build Instructions

This document provides instructions on how to build nekRS into a Docker container that is portable between environments.

Build System Requierments

• Git
• Docker

Inputs

Possible arguments for the Docker build command

• IMAGE

  Default: rocm_gpu:6.2.4

  Note:
  This container needs to be build using Base ROCm GPU.

• NEKRS_BRANCH

  Default: v23.0
  Branch/Tag found: nekRS repo

Building Container

Download the Dockerfile

To run the default configuration:

docker build -t mycontainer/nekrs -f /path/to/Dockerfile . 

Notes:

• mycontainer/nekrs is an example container name.
• the . at the end of the build line is important! It tells Docker where your build context is located!
• -f /path/to/Dockerfile is only required if your docker file is in a different directory than your build context. If you are building in the same directory it is not required.

Running nekRS Container

This section describes how to launch the containers. It is assumed that up-to-versions of Docker and/or Singularity is installed on your system. If needed, please consult with your system administrator or view official documentation.

To run the nekRS Benchmarks, just replace the <nekRS Command> the examples in Running nekRS Benchmarks section of the nekRS readme. The commands can be run directly in an interactive session as well.

Docker

Docker Interactive

docker run --device=/dev/kfd \
           --device=/dev/dri \
           --security-opt seccomp=unconfined \
           -it  mycontainer/nekRS  bin/bash

Docker Single Command

docker run --device=/dev/kfd \
           --device=/dev/dri \
           --security-opt seccomp=unconfined \
           mycontainer/nekRS  \
           <nekRS Command>

Singularity

Build Singularity image from Docker

To build a Singularity image from the locally created docker file do the following:

singularity build nekrs.sif  docker-daemon://mycontainer/nekrs:latest

Singularity Interactive

To launch a Singularity image build locally.

singularity shell --no-home --writable-tmpfs -pwd /opt/nekrs/examples/turbPipePeriodic nekrs.sif

Singularity Single Command

To launch a Singularity image build locally.

singularity run --no-home --writable-tmpfs -pwd /opt/nekrs/examples/turbPipePeriodic nekrs.sif <nekRS Command>

Licensing Information

Your access and use of this application is subject to the terms of the applicable component-level license identified below. To the extent any subcomponent in this container requires an offer for corresponding source code, AMD hereby makes such an offer for corresponding source code form, which will be made available upon request. By accessing and using this application, you are agreeing to fully comply with the terms of this license. If you do not agree to the terms of this license, do not access or use this application.

The application is provided in a container image format that includes the following separate and independent components:

Package	License	URL
Ubuntu	Creative Commons CC-BY-SA Version 3.0 UK License	Ubuntu Legal
CMAKE	OSI-approved BSD-3 clause	CMake License
OpenMPI	BSD 3-Clause	OpenMPI License OpenMPI Dependencies Licenses
OpenUCX	BSD 3-Clause	OpenUCX License
ROCm	Custom/MIT/Apache V2.0/UIUC OSL	ROCm Licensing Terms
nekRS	BSD 3-Clause with additional notes	nekRS nekRS License

Additional third-party content in this container may be subject to additional licenses and restrictions. The components are licensed to you directly by the party that owns the content pursuant to the license terms included with such content and is not licensed to you by AMD. ALL THIRD-PARTY CONTENT IS MADE AVAILABLE BY AMD “AS IS” WITHOUT A WARRANTY OF ANY KIND. USE OF SUCH THIRD-PARTY CONTENT IS DONE AT YOUR SOLE DISCRETION AND UNDER NO CIRCUMSTANCES WILL AMD BE LIABLE TO YOU FOR ANY THIRD-PARTY CONTENT. YOU ASSUME ALL RISK AND ARE SOLELY RESPONSIBLE FOR ANY DAMAGES THAT MAY ARISE FROM YOUR USE OF THIRD-PARTY CONTENT.

Disclaimer

The information contained herein is for informational purposes only, and is subject to change without notice. In addition, any stated support is planned and is also subject to change. While every precaution has been taken in the preparation of this document, it may contain technical inaccuracies, omissions and typographical errors, and AMD is under no obligation to update or otherwise correct this information. Advanced Micro Devices, Inc. makes no representations or warranties with respect to the accuracy or completeness of the contents of this document, and assumes no liability of any kind, including the implied warranties of noninfringement, merchantability or fitness for particular purposes, with respect to the operation or use of AMD hardware, software or other products described herein. No license, including implied or arising by estoppel, to any intellectual property rights is granted by this document. Terms and limitations applicable to the purchase or use of AMD’s products are as set forth in a signed agreement between the parties or in AMD's Standard Terms and Conditions of Sale.

Notices and Attribution

© 2022-2024 Advanced Micro Devices, Inc. All rights reserved. AMD, the AMD Arrow logo, Instinct, Radeon Instinct, ROCm, and combinations thereof are trademarks of Advanced Micro Devices, Inc.

Docker and the Docker logo are trademarks or registered trademarks of Docker, Inc. in the United States and/or other countries. Docker, Inc. and other parties may also have trademark rights in other terms used herein. Linux® is the registered trademark of Linus Torvalds in the U.S. and other countries.

All other trademarks and copyrights are property of their respective owners and are only mentioned for informative purposes.