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irp-gateway.xml
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irp-gateway.xml
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<?xml version="1.0"?>
<tool name="iReceptor Plus Gateway" id="irp-integration" tool_type="data_source" version="1.0.0">
<description>Access the iReceptor Plus Gateway to browse AIRR-seq data.</description>
<command><![CDATA[
python '$__root_dir__/tools/data_source/data_source.py' '$output' $__app__.config.output_size_limit
]]></command>
<inputs action="https://gateway.ireceptor.org/downloads" check_values="false" method="post">
<display>Redirected to $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
<param name="tool_id" type="hidden" value="irp-integration" />
<param name="sendToGalaxy" type="hidden" value="1" />
</inputs>
<request_param_translation>
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
<request_param galaxy_name="URL" remote_name="URL" missing="" />
<!-- There is currently no explicit data_type other than a .zip file. Could be upgraded in the future -->
<!-- <request_param galaxy_name="data_type" remote_name="outputType" missing="zip" /> -->
</request_param_translation>
<outputs>
<data name="output" format="zip" label="irp_gateway_dataset.zip"/>
</outputs>
<options sanitize="False" refresh="True"/>
</tool>