From 81e81ae7076c50e6b9e5678637f19f566b12e879 Mon Sep 17 00:00:00 2001
From: almeidasilvaf <fabricio_almeidasilva@hotmail.com>
Date: Fri, 12 Jan 2024 22:33:37 +0100
Subject: [PATCH] Simplified pkgdown configs

---
 README.Rmd        |  1 -
 README.md         |  6 ++----
 inst/_pkgdown.yml | 11 +++--------
 pkgdown/extra.css |  4 ----
 4 files changed, 5 insertions(+), 17 deletions(-)
 delete mode 100644 pkgdown/extra.css

diff --git a/README.Rmd b/README.Rmd
index 9a8208d..11ead34 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -84,7 +84,6 @@ Please note that the `HybridExpress` project is released with a [Contributor Cod
 * Continuous code testing is possible thanks to [GitHub actions](https://www.tidyverse.org/blog/2020/04/usethis-1-6-0/)  through `r BiocStyle::CRANpkg('usethis')`, `r BiocStyle::CRANpkg('remotes')`, and `r BiocStyle::CRANpkg('rcmdcheck')` customized to use [Bioconductor's docker containers](https://www.bioconductor.org/help/docker/) and `r BiocStyle::Biocpkg('BiocCheck')`.
 * Code coverage assessment is possible thanks to [codecov](https://codecov.io/gh) and `r BiocStyle::CRANpkg('covr')`.
 * The [documentation website](http://almeidasilvaf.github.io/HybridExpress) is automatically updated thanks to `r BiocStyle::CRANpkg('pkgdown')`.
-* The code is styled automatically thanks to `r BiocStyle::CRANpkg('styler')`.
 * The documentation is formatted thanks to `r BiocStyle::CRANpkg('devtools')` and `r BiocStyle::CRANpkg('roxygen2')`.
 
 This package was developed using `r BiocStyle::Biocpkg('biocthis')`.
diff --git a/README.md b/README.md
index 78ae2af..f2427e8 100644
--- a/README.md
+++ b/README.md
@@ -105,7 +105,7 @@ contributing to this project, you agree to abide by its terms.
   *[rcmdcheck](https://CRAN.R-project.org/package=rcmdcheck)* customized
   to use [Bioconductor’s docker
   containers](https://www.bioconductor.org/help/docker/) and
-  *[BiocCheck](https://bioconductor.org/packages/3.17/BiocCheck)*.
+  *[BiocCheck](https://bioconductor.org/packages/3.18/BiocCheck)*.
 - Code coverage assessment is possible thanks to
   [codecov](https://codecov.io/gh) and
   *[covr](https://CRAN.R-project.org/package=covr)*.
@@ -113,11 +113,9 @@ contributing to this project, you agree to abide by its terms.
   website](http://almeidasilvaf.github.io/HybridExpress) is
   automatically updated thanks to
   *[pkgdown](https://CRAN.R-project.org/package=pkgdown)*.
-- The code is styled automatically thanks to
-  *[styler](https://CRAN.R-project.org/package=styler)*.
 - The documentation is formatted thanks to
   *[devtools](https://CRAN.R-project.org/package=devtools)* and
   *[roxygen2](https://CRAN.R-project.org/package=roxygen2)*.
 
 This package was developed using
-*[biocthis](https://bioconductor.org/packages/3.17/biocthis)*.
+*[biocthis](https://bioconductor.org/packages/3.18/biocthis)*.
diff --git a/inst/_pkgdown.yml b/inst/_pkgdown.yml
index 78b66f4..a18b89f 100644
--- a/inst/_pkgdown.yml
+++ b/inst/_pkgdown.yml
@@ -8,14 +8,9 @@ template:
     code_font:
       google: "Source Code Pro"
     primary: "#18416a"                          # navbar hover and sidebar: dark blue
-    navbar-light-bg: "#0092ac"                  # navbar bg: Bioc blue
-    navbar-bg: "#0092ac"                        # navbar bg: Bioc blue
-    navbar-light-brand-color: "#f9fafb"         # pkg name: white
-    text-muted: "#e9ecef"                       # version: light gray
-    navbar-light-color: "#f8f9fa"               # navbar pages text color: white
-    navbar-light-hover-color: "#87b13f"         # navbar text on hover: Bioc green
+    navbar-light-brand-color: "#18416a"         # pkg name: white
+    navbar-light-hover-color: "#18416a"         # navbar text on hover: Bioc green
     pkgdown-nav-height: 78px
 
 navbar:
-  bg: "#0092ac"
-  type: light
\ No newline at end of file
+  type: light
diff --git a/pkgdown/extra.css b/pkgdown/extra.css
deleted file mode 100644
index 9069e6d..0000000
--- a/pkgdown/extra.css
+++ /dev/null
@@ -1,4 +0,0 @@
-
-.bg-light, .navbar-light {
-    background-color: #0092ac !important;
-}