Releases: alliance-genome/agr_ui
Releases · alliance-genome/agr_ui
AGR 7.4.0 Release
What's Changed
- SCRUM-4082 Fixed case in-senstive comparision by @VarunReddy1111 in #1337
- Fixed case insenstive comparision by @VarunReddy1111 in #1338
- Fixing the phenotype annotation linkouts by @VarunReddy1111 in #1340
- SCRUM-4182 removed links to gene type entities by @VarunReddy1111 in #1341
- SCRUM-4182 Remove linkouts to gene type phenotype annotations by @VarunReddy1111 in #1342
- Merge test branch by @VarunReddy1111 in #1344
- Removed linkouts for gene type annotations by @VarunReddy1111 in #1343
- KANBAN-584 pavi integration by @mluypaert in #1345
- JBrowse AGR release constant removal by @mluypaert in #1347
- Merge test to main (KANBAN-584 pavi integration changes) by @mluypaert in #1346
- KANBAN-531: Add community resource links for AD portal by @motenko in #1349
- Updated instance id for 7.3.0. by @christabone in #1350
- Upcoming 7.3.0 release by @christabone in #1351
- Main branch mergeback by @mluypaert in #1348
- Merging test into main for release by @christabone in #1354
- Update package.json gocam-viz to test by @tmushayahama in #1356
- Update package.json gocam-viz by @tmushayahama in #1353
- KANBAN-449: Display help email contact by @motenko in #1355
- KANBAN-598 - Add more resource links to AD portal by @motenko in #1357
- KANBAN-597 Display recent papers for AD portal by @motenko in #1358
- KANBAN-606 Display static entity counts in header by @motenko in #1359
- KANBAN-608 Remove help from AD Publications Count button by @motenko in #1360
- Test into Main - add AD portal updates by @motenko in #1361
- fixing the missing redirect for many XB bigwig tracks by @scottcain in #1363
- Prepare for 7.4.0 Release by @christabone in #1366
- Instance ID for 7_4_0 release. by @christabone in #1368
- Merge stage into test. by @christabone in #1369
- Release for 7.4.0 by @christabone in #1370
Full Changelog: 7.2.0...7.4.0
Contributors
scottcain, motenko, and 4 other contributors
Assets 2
AGR 7.3.0 Release
What's Changed
- SCRUM-4082 Fixed case in-senstive comparision by @VarunReddy1111 in #1337
- Fixed case insenstive comparision by @VarunReddy1111 in #1338
- Fixing the phenotype annotation linkouts by @VarunReddy1111 in #1340
- SCRUM-4182 removed links to gene type entities by @VarunReddy1111 in #1341
- SCRUM-4182 Remove linkouts to gene type phenotype annotations by @VarunReddy1111 in #1342
- Merge test branch by @VarunReddy1111 in #1344
- Removed linkouts for gene type annotations by @VarunReddy1111 in #1343
- KANBAN-584 pavi integration by @mluypaert in #1345
- JBrowse AGR release constant removal by @mluypaert in #1347
- Merge test to main (KANBAN-584 pavi integration changes) by @mluypaert in #1346
- KANBAN-531: Add community resource links for AD portal by @motenko in #1349
- Updated instance id for 7.3.0. by @christabone in #1350
- Main branch mergeback by @mluypaert in #1348
Full Changelog: 7.2.0...7.3.0
Contributors
motenko, mluypaert, and 2 other contributors
Assets 2
AGR 7.2.0 Release
What's Changed
- test into main by @motenko in #1245
- Test into Main for KANBAN-437 by @motenko in #1251
- Test into main for KANBAN-453 by @motenko in #1253
- KANBAN-499: Fix 'Browse APIs' action button link by @motenko in #1259
- test into main: Fix 'Browse APIs' action button link by @motenko in #1260
- Merge Stage to Test for release by @oblodgett in #1261
- bringing JBrowse 2 branch up to date with stage by @scottcain in #1263
- Release 7.0.0 to production by @oblodgett in #1264
- Merge Main to stage by @oblodgett in #1266
- Merge Main to test by @oblodgett in #1265
- Main to Test by @oblodgett in #1268
- Test to Stage by @oblodgett in #1269
- fair chance I got the proxy settings for jbrowse2 right by @scottcain in #1270
- Switch to jb2 by @scottcain in #1271
- Bump wc-gocam-viz version in package.json by @dustine32 in #1274
- Add orthology jbrowse2 by @scottcain in #1275
- SCRUM-2016 by @adamgibs in #1276
- Add more config and styling for pathway widget update by @dustine32 in #1277
- SCRUM-3647 by @adamgibs in #1278
- SCRUM-3647 by @adamgibs in #1279
- KANBAN-519 by @adamgibs in #1280
- SCRUM-3648 by @adamgibs in #1281
- SCRUM-3649 add back download button by @adamgibs in #1283
- rename filter for disease column by @cmpich in #1284
- SCRUM-3648 by @adamgibs in #1286
- update disease filter by @adamgibs in #1285
- adding a few proxy lines to allow fetching RGD and XenBase data by @scottcain in #1282
- Update ref string by @adamgibs in #1287
- bumping seqpanel version to give explicit warning about inferred sequ… by @scottcain in #1288
- Update README.md by @motenko in #1289
- Update README.md by @motenko in #1290
- KANBAN-458 - Add Textpresso landing page by @motenko in #1291
- KANBAN-458 (from test) into main by @motenko in #1292
- updating jbrowse menu link to point at JB2 by @scottcain in #1294
- adding region highlighting for variants linked out to JBrowse by @scottcain in #1293
- improving the buffer around genes when highlighting a variant by @scottcain in #1295
- SCRUM-3743 UI work to display disease page associated alleles from persistent store by @VarunReddy1111 in #1296
- Revert "SCRUM-3743 UI work to display disease page associated alleles from persistent store" by @VarunReddy1111 in #1297
- Fixed gene table in disease page according to API fields by @VarunReddy1111 in #1298
- KANBAN-545: Reorder 'Data and Tools' menu links by @motenko in #1299
- SCRUM-3919 Disabling the download button for data tables with more than 90000 rows by @VarunReddy1111 in #1300
- Fixing gene hyperlink by @VarunReddy1111 in #1301
- Test into main - Add KANBAN-545 by @motenko in #1302
- Change to fix allele page disease associations table to not display A… by @VarunReddy1111 in #1303
- Change to display the additional implicated genes in annotation pop d… by @VarunReddy1111 in #1304
- Change in annotation details pop by @VarunReddy1111 in #1306
- Update release to the snapshot date by @oblodgett in #1307
- SCRUM-3985 update basedOn and GeneticModifiersCellCuration identifiers by @adamgibs in #1308
- SCRUM-3986 update StrainBackground identifier by @adamgibs in #1309
- adding proxy entries for JB2 for test and production by @scottcain in #1305
- Release 7.1.0 into Test by @oblodgett in #1310
- Fix jbrowse covid by @scottcain in #1311
- Added new make file targets for ui deployments by @oblodgett in #1312
- Deploy 7.1.0 to production. by @oblodgett in #1313
- Main to stage by @oblodgett in #1314
- SCRUM-4012 add reference name lookup for mod references by @adamgibs in #1318
- Textpresso rewrites by @valearna in #1317
- Release textpresso rules by @valearna in #1319
- Main merge back by @adamgibs in #1321
- SCRUM-3841 by @adamgibs in #1315
- Update README.md by @motenko in #1323
- KANBAN-568: Fix MOD landing pages' search url by @motenko in #1322
- KANBAN-561: Update WB MOD page resources by @motenko in #1324
- Push test into main for KANBAN-561 and KANBAN-568 by @motenko in #1325
- SCRUM-4033 update ModelCellCuration to pass in an object to by @adamgibs in #1326
- Kanban 419: Create AD portal page by @motenko in #1328
- Test mergeback by @adamgibs in #1330
- SCRUM-4032 updated allele column width by @adamgibs in #1331
- KANBAN-521: Add links for Mastodon and Bluesky by @motenko in #1332
- Added the new 7.2.0 instance by @oblodgett in #1333
- Release 7.2.0 onto Test by @oblodgett in #1335
- Release 7.2.0 by @oblodgett in #1336
New Contributors
- @VarunReddy1111 made their first contribution in #1296
Full Changelog: 7.0.0...7.2.0
Contributors
scottcain, oblodgett, and 6 other contributors
Assets 2
AGR 7.1.0 Release
What's Changed
- test into main by @motenko in #1245
- Test into Main for KANBAN-437 by @motenko in #1251
- Test into main for KANBAN-453 by @motenko in #1253
- KANBAN-499: Fix 'Browse APIs' action button link by @motenko in #1259
- test into main: Fix 'Browse APIs' action button link by @motenko in #1260
- Merge Stage to Test for release by @oblodgett in #1261
- bringing JBrowse 2 branch up to date with stage by @scottcain in #1263
- Release 7.0.0 to production by @oblodgett in #1264
- Merge Main to stage by @oblodgett in #1266
- Merge Main to test by @oblodgett in #1265
- Main to Test by @oblodgett in #1268
- Test to Stage by @oblodgett in #1269
- fair chance I got the proxy settings for jbrowse2 right by @scottcain in #1270
- Switch to jb2 by @scottcain in #1271
- Bump wc-gocam-viz version in package.json by @dustine32 in #1274
- Add orthology jbrowse2 by @scottcain in #1275
- SCRUM-2016 by @adamgibs in #1276
- Add more config and styling for pathway widget update by @dustine32 in #1277
- SCRUM-3647 by @adamgibs in #1278
- SCRUM-3647 by @adamgibs in #1279
- KANBAN-519 by @adamgibs in #1280
- SCRUM-3648 by @adamgibs in #1281
- SCRUM-3649 add back download button by @adamgibs in #1283
- rename filter for disease column by @cmpich in #1284
- SCRUM-3648 by @adamgibs in #1286
- update disease filter by @adamgibs in #1285
- adding a few proxy lines to allow fetching RGD and XenBase data by @scottcain in #1282
- Update ref string by @adamgibs in #1287
- bumping seqpanel version to give explicit warning about inferred sequ… by @scottcain in #1288
- Update README.md by @motenko in #1289
- Update README.md by @motenko in #1290
- KANBAN-458 - Add Textpresso landing page by @motenko in #1291
- KANBAN-458 (from test) into main by @motenko in #1292
- updating jbrowse menu link to point at JB2 by @scottcain in #1294
- adding region highlighting for variants linked out to JBrowse by @scottcain in #1293
- improving the buffer around genes when highlighting a variant by @scottcain in #1295
- SCRUM-3743 UI work to display disease page associated alleles from persistent store by @VarunReddy1111 in #1296
- Revert "SCRUM-3743 UI work to display disease page associated alleles from persistent store" by @VarunReddy1111 in #1297
- Fixed gene table in disease page according to API fields by @VarunReddy1111 in #1298
- KANBAN-545: Reorder 'Data and Tools' menu links by @motenko in #1299
- SCRUM-3919 Disabling the download button for data tables with more than 90000 rows by @VarunReddy1111 in #1300
- Fixing gene hyperlink by @VarunReddy1111 in #1301
- Test into main - Add KANBAN-545 by @motenko in #1302
- Change to fix allele page disease associations table to not display A… by @VarunReddy1111 in #1303
- Change to display the additional implicated genes in annotation pop d… by @VarunReddy1111 in #1304
- Change in annotation details pop by @VarunReddy1111 in #1306
- Update release to the snapshot date by @oblodgett in #1307
- SCRUM-3985 update basedOn and GeneticModifiersCellCuration identifiers by @adamgibs in #1308
- SCRUM-3986 update StrainBackground identifier by @adamgibs in #1309
- adding proxy entries for JB2 for test and production by @scottcain in #1305
- Release 7.1.0 into Test by @oblodgett in #1310
- Fix jbrowse covid by @scottcain in #1311
- Added new make file targets for ui deployments by @oblodgett in #1312
- Deploy 7.1.0 to production. by @oblodgett in #1313
- Main to stage by @oblodgett in #1314
New Contributors
- @VarunReddy1111 made their first contribution in #1296
Full Changelog: 7.0.0...7.1.0
Contributors
scottcain, oblodgett, and 5 other contributors
Assets 2
AGR 7.0.0 Release
What's Changed
- Merge Main to Test by @oblodgett in #1205
- Merge Test to stage by @oblodgett in #1206
- Update package.json by @scottcain in #1207
- SCRUM-3305 fix sequencer viewer logic on allele section by @cmpich in #1208
- SCRUM-3305 by @cmpich in #1209
- Added more ignores to the robots file by @oblodgett in #1210
- New release to production. by @oblodgett in #1211
- Added fixes for search console by @oblodgett in #1212
- Match API and indexer changes to support curation v0.26.0 (SCRUM-3367) by @mluypaert in #1213
- Remove gene name from column header on interaction table, KANBAN-386 by @motenko in #1215
- SCRUM-2393: Allele disease annotations (UI) by @abecerra in #1216
- SCRUM-2393: Allele disease annotations fix for warning by @abecerra in #1219
- Revert - Kanban 386: Remove gene symbol from table column titles by @motenko in #1218
- Add Xenbase MOD landing page - KANBAN-401 by @motenko in #1220
- SCRUM-2393: consolidation of Disease Qualifiers by @abecerra in #1221
- Replace facebook icon with youtube icon - KANBAN-401 by @motenko in #1222
- Revert "SCRUM-2393: consolidation of Disease Qualifiers" by @abecerra in #1223
- Update main with test by @motenko in #1224
- SCRUM-2393: Removal of columns by @abecerra in #1225
- SCRUM-2393: consolidate data providers in UI as gene page does it by @abecerra in #1227
- improves button labels in sequence details widget by @scottcain in #1226
- SCRUM-3565: Make PropTypes more generic to avoid console warnings by @abecerra in #1228
- KANBAN-464: Remove 'Fly RNA-Seq' link from Flybase member page by @motenko in #1229
- KANBAN-464 by @motenko in #1230
- KANBAN 451 - Upgrade Font Awesome by @motenko in #1231
- Kanban 471 - Update OntoMate url on RGD member page by @motenko in #1232
- Merge UI updates into main by @motenko in #1234
- Update deps by @adamgibs in #1233
- KANBAN-474: Remove fa free-regular icons package by @motenko in #1235
- Remove FA package by @motenko in #1238
- KANBAN-473 by @adamgibs in #1241
- Main to test by @oblodgett in #1243
- SCRUM-3604: render Add Impl Genes and Str Background only in Gene page by @abecerra in #1242
- Kanban 452: Change GO-CAM link text for Pathways widget by @motenko in #1240
- Cdk amplify rules SCRUM-3598 (Add cdk to deploy Amplify Applications) by @oblodgett in #1244
- KANBAN-457: Add 'Data Preservation' to About menu by @motenko in #1239
- Added intermine proxy links by @oblodgett in #1246
- SCRUM-3644: Reorder logic for filters by @abecerra in #1247
- SCRUM-3627: bugfix removing SGD prefix in external link by @abecerra in #1248
- bumping seqpanel urls to 7.0.0 (should really parameterize!) by @scottcain in #1249
- Kanban 437: Add Submit Data page by @motenko in #1250
- KANBAN-453: Update banner logo with Human hex by @motenko in #1252
- SCRUM-3672: Fix Gene Allele Details by @abecerra in #1254
- Merge test by @adamgibs in #1256
- KANBAN-490 by @adamgibs in #1257
- moved build_robots and build_sitemap to prebuild step by @adamgibs in #1258
- updating the generic-sequence-panal package to deal with SARS-CoV-2 by @scottcain in #1262
Full Changelog: 6.0.0...7.0.0
Contributors
abecerra, scottcain, and 5 other contributors
Assets 2
AGR 6.0.0 Release
What's Changed
- gocam-viz update: layout, complexes and gene panel by @tmushayahama in #1097
- Release 5.4.0 by @oblodgett in #1125
- SCRUM-2394: add attributes to disease annations popup by @abecerra in #1126
- SCRUM-2727 enable filtering on reference column for disease associati… by @cmpich in #1128
- SCRUM-2925: fixes for references in popup by @abecerra in #1130
- SCRUM-2394: fix passing props by de-structuring by @abecerra in #1132
- Add sequence panel by @scottcain in #1131
- Revert "Add sequence panel" by @scottcain in #1133
- SCRUM-2394 asserted genes and notes updates by @adamgibs in #1134
- SCRUM-2394: increase popup width and add no-wrap to notes cell by @abecerra in #1135
- Add Models section popup help on gene page. by @motenko in #1137
- Update github actions by @oblodgett in #1138
- Another fix for github actions by @oblodgett in #1139
- Add Genetic Interactions help pop-up by @motenko in #1136
- SCRUM-2723 removed subtype hack code by @adamgibs in #1140
- Kanban 325 by @motenko in #1141
- Kanban 331 by @motenko in #1144
- Add molecular interactions help popup on gene page by @motenko in #1142
- Add molecular interactions help popup on gene page by @motenko in #1145
- Revert "Add molecular interactions help popup on gene page" by @motenko in #1146
- Kanban 330 by @motenko in #1143
- SCRUM-2833: add genetic modifiers by @abecerra in #1148
- SCRUM-2833: make gene and allele links internal by @abecerra in #1149
- SCRUM-2704 by @cmpich in #1150
- SCRUM-2703: add paralogy section by @abecerra in #1151
- SCRUM-2703: sort by number of predictions methods matched by @abecerra in #1152
- KANBAN-357 Update build_resource_descriptors.js to create dist folder by @adamgibs in #1154
- SCRUM-2823 add disease qualifier column to disease annoation table on… by @cmpich in #1153
- SCRUM-3082: refactor {ortho,para} logy sections by @abecerra in #1155
- SCRUM-2824 make disease qualifier column filter box a list of values by @cmpich in #1156
- SCRUM-2806 add update-on-subject-change prop to go ribbon by @adamgibs in #1157
- KANBAN-328 by @motenko in #1159
- KANBAN-327 by @motenko in #1160
- KANBAN-331 by @motenko in #1161
- KANBAN-325 by @motenko in #1162
- KANBAN-326 by @motenko in #1163
- Kanban-329 by @motenko in #1164
- KANBAN-330 by @motenko in #1165
- SCRUM-2372 by @adamgibs in #1166
- Gene page Sequence panel by @scottcain in #1158
- Added focus gene id to query by @oblodgett in #1167
- Changed to focus taxon id by @oblodgett in #1168
- SCRUM-2372 add code to split referencedCurie by @adamgibs in #1169
- SCRUM-2372 updated curie prefix logic by @adamgibs in #1170
- SCRUM-3092 added AssociationCellCuration to AnnotatedEntitiesPopupCur… by @adamgibs in #1171
- KANBAN-328 by @motenko in #1174
- KANBAN-326 by @motenko in #1173
- KANBAN-325 by @motenko in #1172
- SCRUM-3201 remove duplicates from basedOnGeneCellCuration by @adamgibs in #1175
- SCRUM-3203 Display AGM name instead of curie by @markquintontulloch in #1176
- Kanban 328 by @motenko in #1177
- Kanban 366 by @scottcain in #1178
- updating version of seqpanel to get a typo fix by @scottcain in #1179
- UI changes for Rel 6.0.0 by @motenko in #1181
- UNTESTED adding updated seqpanel and changing the label to "Sequence Details" by @scottcain in #1183
- SCRUM-3219 by @adamgibs in #1184
- SCRUM-3222: paralogy UI changes for DIOPT with new ranking by @abecerra in #1185
- Added code for deploing a ALB with the UI code by @oblodgett in #1186
- SCRUM-3222: paralogy UI fix for method names by @abecerra in #1187
- SCRUM-3222: remove auto-capitalization by @abecerra in #1188
- SCRUM-3222: expand help paragraph for rank by @abecerra in #1189
- bumping sequence panel version to address https://agr-jira.atlassian.… by @scottcain in #1190
- fixing spacing and class issues by @scottcain in #1191
- bumping seqpanel version by @scottcain in #1192
- KANBAN-370 by @motenko in #1193
- KANBAN-215 by @motenko in #1194
- Add 'Cite Us' page by @motenko in #1196
- Bring Main into stage. by @oblodgett in #1195
- Release 6.0.0 into test by @oblodgett in #1198
- Updated rank description. by @christabone in #1197
- Rank update list by @christabone in #1200
- Fix html tag by @abecerra in #1202
- Updating test with the Paralogy help correction by @abecerra in #1201
- adding help text for seq details. by @scottcain in #1203
- Bring sequence panel into test. by @oblodgett in #1204
- Release 6.0.0 to Production by @oblodgett in #1199
New Contributors
- @markquintontulloch made their first contribution in #1176
Full Changelog: 5.4.0...6.0.0
Contributors
abecerra, scottcain, and 7 other contributors
Assets 2
AGR 5.4.0 Release
What's Changed
- fixing Jbrowse link to point at "assembly picker" by @scottcain in #1082
- Release 5.3.0 by @oblodgett in #1081
- SCRUM-2207 update WB mod landing page About content for Ranjana and M… by @azurebrd in #1083
- KANBAN-292 Reverting algorithms with DIOPT 9 data fix by @christabone in #1084
- SCRUM-2035 - Update Alliance Facebook likouts by @chris-grove in #1085
- SCRUM-2073 removed SARS-CoV-2 variants/alleles from downloadsPage by @adamgibs in #1086
- SCRUM-2035 - Update Facebook links on release 5.4.0 branch by @chris-grove in #1087
- Added wordpress slug for About us section by @kthorat-prog in #1088
- SCRUM-2021 by @adamgibs in #1089
- SCRUM-2374 modify filter name to work with API by @cmpich in #1091
- Fixed for structure change by @oblodgett in #1092
- SCRUM-2374 filter name adjustment to work with API by @cmpich in #1093
- Added code for all names by @oblodgett in #1094
- Merge master into release. by @oblodgett in #1095
- Initial GH Actions by @oblodgett in #1096
- SCRUM-2386 AssocationType fieldname changed by @kthorat-prog in #1099
- Added fix for WB AGM's by @oblodgett in #1100
- Fix for WB strains by @oblodgett in #1101
- SCRUM-2649: make Saccharomyces cerevisiae the name for all subspecies by @abecerra in #1103
- SCRUM-2597 by @adamgibs in #1105
- SCRUM-2649: make Saccharomyces cerevisiae the name for all subspecies in filter by @abecerra in #1104
- SCRUM-2717 by @adamgibs in #1106
- SCRUM-2740 suppress filter icon on reference column of disease table … by @cmpich in #1107
- gocam-viz changes: layout, complexes and gene panel by @tmushayahama in #1109
- gocam-viz changes: layout, complexes and gene panel by @tmushayahama in #1108
- Switched to GA4 by @oblodgett in #1110
- Fix page view error by @oblodgett in #1111
- addresses https://agr-jira.atlassian.net/browse/KANBAN-318 by @scottcain in #1113
- Updated to [email protected] by @tmushayahama in #1115
- fixing another broken jbrowse link; addresses https://agr-jira.atlass… by @scottcain in #1114
- removed slash and index.html. Maybe this will fix this 🤷♂️ by @scottcain in #1116
- Ga4 parallel by @oblodgett in #1117
- SCRUM-2783 by @adamgibs in #1118
- SCRUM-2783 changed routing for bluegenes, api, and jbrowse by @adamgibs in #1119
- SCRUM-2783 made jbrowse an external link in site menu by @adamgibs in #1121
- SCRUM-2798 remove corona virus 19 from home page and add link to Data… by @cmpich in #1123
- Added slug agr-topbar by @oblodgett in #1124
New Contributors
- @kthorat-prog made their first contribution in #1088
- @abecerra made their first contribution in #1103
Full Changelog: 5.3.0...5.4.0
Contributors
abecerra, scottcain, and 8 other contributors
Assets 2
AGR 5.3.0 Release
What's Changed
- add xenbase hex to footer logo by @motenko in #1058
- Scrum 1564 Adding Xenbase Logo by @pjhale in #1059
- Added Xenbase to header & footer by @pjhale in #1060
- change url to bluegenes by @kkarra in #1061
- Fix dependabot issues by @oblodgett in #1063
- Bump ua-parser-js from 0.7.21 to 0.7.31 by @dependabot in #1036
- Bump follow-redirects from 1.12.1 to 1.14.8 by @dependabot in #1037
- Bump next from 11.1.0 to 12.1.0 by @dependabot in #1038
- Bump url-parse from 1.5.3 to 1.5.10 by @dependabot in #1040
- Bump minimist from 1.2.5 to 1.2.6 by @dependabot in #1049
- Bump eventsource from 1.1.0 to 1.1.1 by @dependabot in #1056
- Bump moment from 2.29.1 to 2.29.4 by @dependabot in #1057
- adding links for JBrowse to footer and site map KANBAN-166 by @scottcain in #1003
- Fix dependabot by @oblodgett in #1067
- Bump nanoid from 3.1.22 to 3.3.4 by @dependabot in #1066
- Bump axios from 0.21.1 to 0.21.4 by @dependabot in #1064
- Bump ejs from 3.1.6 to 3.1.8 by @dependabot in #1065
- adding frogs to the constants along with other species by @scottcain in #1068
- shot in the dark, but this may fix the X. laevis/apollo issue by @scottcain in #1070
- SCRUM-1963 - Turn off single cell expression atlas links for Xenopus by @chris-grove in #1071
- Replace AGR Header Logo by @pjhale in #1069
- SCRUM-1940 - Add Xenopus species to Downloads page by @chris-grove in #1072
- Adding Xenbase to sprite by @pjhale in #1062
- SCRUM-1940 fixed xenopus download row display by @adamgibs in #1073
- Adding case to add chr prefix to Laevis JBrowse Links by @pjhale in #1074
- Fix for laevis scaffold issue by @pjhale in #1076
- the increadingly unwieldy test for modifying location chromosome strings by @scottcain in #1075
- SCRUM-1968 correct xenopus order by @cmpich in #1077
- Revert algorithms for Xenbase release by @christabone in #1078
- KANBAN-250 Add Xenbase algorithm by @christabone in #1079
- Update orthologyFilterHelp.js KANBAN-254 by @christabone in #1080
New Contributors
- @chris-grove made their first contribution in #1071
Full Changelog: 5.2.0...5.3.0
Contributors
scottcain, chris-grove, and 8 other contributors
Assets 2
AGR 5.2.0 Release
What's Changed
- Release 5.1.0 into master by @oblodgett in #1048
- Scrum 1466 by @azurebrd in #1052
- SCRUM-1219 KANBAN-130 DIOPT 9 updates by @christabone in #1053
- SCRUM-1219 fix by @christabone in #1054
- SCRUM-1064 Pathway widget queries GO-CAMs by UniProtKB for human genes by @dustine32 in #1050
- SCRUM-1219 by @christabone in #1055
New Contributors
- @dustine32 made their first contribution in #1050
Full Changelog: 5.1.0...5.2.0
Contributors
azurebrd, oblodgett, and 2 other contributors
Assets 2
AGR 5.1.0 Release
What's Changed
- add js warning to index.html by @bryon-czoch in #873
- merge Release 4.1.0 back into master by @sibyl229 in #874
- Support Development of shareable modules in the same repo by @sibyl229 in #818
- MOD landing page by @sibyl229 in #882
- Improve shared header and footer by @sibyl229 in #884
- update reverse proxy for mod-landing-pages by @sibyl229 in #887
- Merge release 4.1.0 to master by @sibyl229 in #894
- Upgrade Nx and dependencies by @sibyl229 in #895
- added NIH community call instead of Covid info by @nuin in #897
- Changed timeout to 60s for disease display page SCRUM-216 by @oblodgett in #898
- Alert box back to Covid by @nuin in #899
- feat(about): about page with static content - one page for each mod by @valearna in #901
- SCRUM-616 and SCRUM-659 (add link to WB) by @nuin in #903
- feat(modLanding): new file structure based on separate folders with d… by @valearna in #902
- Changes by @nuin in #905
- First sprint sprint by @nuin in #906
- ZFIN landing page added, including banner image, colours, logo, etc by @nuin in #907
- First MOD landing pages by @valearna in #908
- member labels in the menu changed per feedback by @nuin in #909
- !DO NOT MERGE INTO MASTER! fix(modLanding): removed mod landing pages… by @valearna in #911
- Refactoring + tab label with MOD name by @valearna in #910
- Branding for all other MODs by @valearna in #913
- fix(modLanding): moved GO at the bottom of the dropdown menu + fixed … by @valearna in #916
- SCRUM-206 by @gildossantos in #917
- More changes by @nuin in #920
- FB banner added by @nuin in #921
- Fixed method call by @oblodgett in #922
- fix scrum-206 timeout by @FB-ping in #923
- Changed GO to GOC on footer for consistency with main page logos by @nuin in #925
- It is GOC everywhere now by @nuin in #926
- GO banner added by @nuin in #927
- Scrum 618 news by @FB-ping in #928
- Expanded banner and title invisible bar by @nuin in #929
- TEST: Do Not Merge - adding mod landing page test workflow by @dougli1sqrd in #919
- JBrowse Link to Human Fix by @pjhale in #924
- reverted banner to previous stage by @nuin in #931
- Resources by @nuin in #930
- fix allele table loading by @oblodgett in #933
- fix allele table loading by @sibyl229 in #932
- GOC about updated by @nuin in #934
- SCRUM-628: Update FB resources by @gildossantos in #936
- Scrum 618 news fix key by @FB-ping in #937
- SCRUM-957 Added max-width and padding to an extra container property … by @azurebrd in #938
- SCRUM-952 allow max-width of containers again, but keep margins, so a… by @azurebrd in #940
- added ParaSite to WB resources by @nuin in #941
- Add back MOD abbr to browser tab title by @gildossantos in #944
- SCRUM-633 by @gildossantos in #946
- start of tests by @ianlongden in #948
- SCRUM-957 more layout changes from talking to Ceri. Replaces colorfu… by @azurebrd in #949
- SCRUM-957 more changes to css and layout. Importing fonts. About li… by @azurebrd in #951
- SCRUM-976: Use FlyBase and WormBase in place of FB and WB by @gildossantos in #952
- SCRUM-977: Use "MGD" consistently rather than "MGI". by @gildossantos in #953
- SCRUM-976, SCRUM-977 by @gildossantos in #954
- fix switched rodent hex logos by @gildossantos in #955
- SCRUM-978: Images by @gildossantos in #956
- SCRUM-957 fix margin bottom making the body background color coming t… by @azurebrd in #957
- SCRUM-633 by @gildossantos in #958
- MGD tweaks by @gildossantos in #959
- SCRUM-990 David Shaw sent a banner image. Renamed RGD topBanner to f… by @azurebrd in #960
- SCRUM-989 Eric made a new SGD banner image. As we have images that f… by @azurebrd in #961
- scrum-995 add static link for flybase, zfin, goc' by @FB-ping in #964
- footer initial template and data for WormBase by @ianlongden in #963
- SCRUM-990 new image from David Shaw by @azurebrd in #965
- added footer data for all by @ianlongden in #966
- Some changes by @nuin in #968
- Some changes by @nuin in #969
- fixing project name and version on package.json by @nuin in #971
- Design changes by @nuin in #970
- Box shadow by @azurebrd in #973
- SCRUM-942 SCRUM-993 Chris Grove has made a new image, Ranjana has pic… by @azurebrd in #974
- add news link of MGD by @FB-ping in #975
- SCRUM-992 new zfin banner image from Sridhar by @azurebrd in #976
- SCRUM-995 SCRUM-988 RGD adding a news static link. Trying out a new … by @azurebrd in #977
- SCRUM-988 Jennifer Smith likes the older banner image for RGD better by @azurebrd in #978
- Footer fix for SCRUM-831, Resource text update for SCRUM-997 by @azurebrd in #982
- SCRUM-799 making an MGD footer text link shorter to fit in one line f… by @azurebrd in #984
- Last chance for mocks by @ianlongden in #983
- Zfin footer by @azurebrd in #985
- Fb news test by @ianlongden in #986
- tests for (sgd) wordpress v1.1 news and data for this. Includes one t… by @ianlongden in #988
- SCRUM-994 Link Flybase News to a URL by @azurebrd in #987
- SCRUM-994 flybase test for news by @azurebrd in #989
- SCRUM-997 updated a resource link, added links for zfin news by @azurebrd in #990
- SCRUM-997 flybase resource search text changed by @azurebrd in #992
- Update VCF assembly for mouse to 39 from 38 by @adamjohnwright in #994
- News zfin (Do NOT Merge) by @azurebrd in #993
- SCRUM-1032 small zfin about change by @azurebrd in #995
- put tests in sub directories by @ianlongden in #996
- SCRUM-820 added tests for zfin news by @azurebrd in #997
- New footer tests for each member by @ianlongden in #998
- Meetings by @azurebrd in #999
- Resource container tests by @ianlongden in #1000
- SCRUM-1026 removed hyphen, kept linebreak, linked more meetings to SG… by @azurebrd in https://github.com/a...
Contributors
nuin, adamjohnwright, and 11 other contributors