.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
config/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
tests/results
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/

# Translations
*.mo
*.pot

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# dotenv
.env
.envrc

# virtualenv
.venv/
venv/
ENV/
curation_venv/

# Spyder project settings
.spyderproject

# Rope project settings
.ropeproject

# Jetbrains project settings
.idea/
.vscode/
.run/

settings.py
*.db
*.gem
*.swp
*~
.DS_Store
.analysis
.bundle/
.byebug_history
.jekyll-metadata
.ruby-gemset
.ruby-version
.sass-cache
/test/source/file_name.txt
/vendor
Gemfile.lock
_site/
bin/
bbin/
coverage
gh-pages/
pkg/
site/_site/
test/dest
tmp/*
/data_steward/test/test_data/export/synpuf/*.csv
tests/test_data/export/synpuf/*.csv
.circleci/oldconfig.yml
/data_steward/tools/consolidated_achilles_report/curation_report/data/*

# ------------------------

# EHR Operations Additions

# Notebooks
data_steward/notebooks/parameters.py
*.ipynb

# Files to exclude for analytics
data_steward/analytics/**/*.xlsx
data_steward/analytics/**/*.pdf
data_steward/analytics/**/*.csv
data_steward/analytics/**/*.jpg
data_steward/analytics/**/*.png

# xlrd files needed to read excel outputs
data_steward/analytics/tools/visualizations/completeness/xlrd/*
data_steward/analytics/tools/visualizations/conformance/xlrd/*
data_steward/analytics/tools/visualizations/plausibility/xlrd/*

# HTML report generated by data quality scripts
data_steward/analytics/cdr_ops/*.html

# Exclude files used in email_generator that should not be available
data_steward/analytics/tools/email_generator/contact_list.py

# Exclude files used in metric_over_time that should not be available
data_steward/analytics/table_metrics/metrics_over_time/metric_overtime.Rmd

# Logs
data_steward/logs
logs

# History
.history