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Hey, on this note, it seems like if we want to implement I burrows-wheeler transform prior to compression, doing it in python requires waaaay too much RAM, I put a small wrapper around bwt-disk in place yesterday, I can replace the bwt function to call that binary instead. one issue with that though is calling the makefile from the setup.py (I tried to fix this yesterday but ran into issues overriding the install command).
Since we now have a
setup.py
ready, I would suggest submitting the package to PyPI so the package can be added to bioconda.The text was updated successfully, but these errors were encountered: