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Submit to PyPI as a package #68

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souravsingh opened this issue Oct 14, 2018 · 3 comments
Open

Submit to PyPI as a package #68

souravsingh opened this issue Oct 14, 2018 · 3 comments
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@souravsingh
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Since we now have a setup.py ready, I would suggest submitting the package to PyPI so the package can be added to bioconda.

@Benjamin-Lee Benjamin-Lee self-assigned this Oct 15, 2018
@Benjamin-Lee
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I'll do this when we're ready and be the maintainer for the PyPI package since I'm a heavy user of it (and I don't think anyone else in the group is)

@souravsingh
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Submitting to PyPI would allow me to easily create a recipe for bioconda, since it would involve fetching the tarfile from PyPI.

@wilcas
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wilcas commented Oct 15, 2018

Hey, on this note, it seems like if we want to implement I burrows-wheeler transform prior to compression, doing it in python requires waaaay too much RAM, I put a small wrapper around bwt-disk in place yesterday, I can replace the bwt function to call that binary instead. one issue with that though is calling the makefile from the setup.py (I tried to fix this yesterday but ran into issues overriding the install command).

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