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Packaging the code for use #10

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souravsingh opened this issue Oct 12, 2018 · 4 comments
Open

Packaging the code for use #10

souravsingh opened this issue Oct 12, 2018 · 4 comments

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@souravsingh
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Packaging the code would be quite handy for other users to use the code for their analyses. Here are some possible approaches towards it-

  1. Package to PyPI for wide usage
  2. Package to bioconda channel for use by scientists(bioinformaticians and such)
  3. Package to Galaxy toolset(This would be easily done once 2) is done.)
@alexsweeten
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Since bioinformaticians are our target audience, I'm aiming for a bioconda channel.

@Benjamin-Lee
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+1 for PyPI!

@Benjamin-Lee
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Are PyPi and bioconda mutually exclusive options?

@souravsingh
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Yes. PyPI packages are accessible through the website- https://pypi.org/ and requires pip for installing the packages. Bioconda requires conda to install the packages. I am personally inclined towards bioconda, but I don't have a problem with PyPI.

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