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mitoBench_pipeline-SGE.json
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mitoBench_pipeline-SGE.json
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{
"__default__" :
{
"vfree" : "8G",
"hvmem" : "8G",
"class" : "*",
"out" : "cluster_logs/\\$JOB_NAME.\\$JOB_ID.o",
"err" : "cluster_logs/\\$JOB_NAME.\\$JOB_ID.e"
},
"prepare_fastq" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"bwa_aln" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"bwa_sampe" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"bwa_samse" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"bam2snpAD" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"snpAD_estimation" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"snpAD_call" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"snpAD_vcf2fa" :
{
"vfree" : "2G",
"hvmem" : "2G"
},
"namesort_norewrap" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"revert_bamrewrap" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"sort_norewrap" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"flagstat" :
{
"vfree" : "2G",
"hvmem" : "2G"
},
"subsample_damageprofiler" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"mixemt" :
{
"vfree" : "12G",
"hvmem" : "12G",
"class" : "default"
},
"contamMix_create_sequencePanel" :
{
"vfree" : "4G",
"hvmem" : "4G"
},
"contamMix_align_against_consensus" :
{
"vfree" : "6G",
"hvmem" : "6G"
},
"contamMix_estimate" :
{
"vfree" : "4G",
"hvmem" : "4G",
"class" : "default"
}
}