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Solve conda environment issue for the rule "identify_kingdom_phylum_contigs" #3

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alexhbnr opened this issue Mar 8, 2022 · 1 comment
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Solve conda environment issue for the rule "identify_kingdom_phylum_contigs" #3

alexhbnr opened this issue Mar 8, 2022 · 1 comment

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@alexhbnr
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alexhbnr commented Mar 8, 2022

The script uses the Python modules bgzip and pyfastx that are not caught in any environmental file. Prepare a YAML requiring all the programs to run the pipeline to install as a standalone environment.
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Removed dependency on bgzip and replaced it with a function from Biopython in commit c646431.

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