I'm Using New Primers: A Guide

If you're using primers other than Mifish, DLoop, or C16, you will need to prepare the pipeline to recieve your data. Below is a checklist of steps for if you're using new primers:

1. Fill out a new row in primer_data.csv
2. Make sure your .fastq files are named using the correct naming conventions
3. Put your primer's taxonomy reference database in the metadata folder
4. Add primer's sequences to the primer_trimming.sh script