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code.php
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<?php
$title="Writings";
include("header.inc");
?>
<div class="span-24 last">
<h2>Code</h2>
</div>
<div class="span-16 append-1">
<p>Code was meant to be shared! I have written a number of pieces of software for research, profit or play. Here it all is free to download and modify under the <a href="http://en.wikipedia.org/wiki/GNU_General_Public_License">GNU GPL</a>. Find me <a href="http://github.com/aleifer">on GitHub</a> or <a href="http://stackoverflow.com/users/200688/andyl#qpage_1-anpage_1-qsort_recent-ansort_votes">Stack Overflow</a>.
</p>
<hr class="space">
<h3>Scientific Software</h3>
<h4><a href="http://github.com/samuellab/mindcontrol">MindControl</a></h4>
<p>Closed-loop computer vision software suite to manipulate neural activity in a freely moving nematode. C. This is the software behind the <a href="http://colbert.physics.harvard.edu">CoLBeRT system</a>. See Leifer et al, <a href="http://www.ncbi.nlm.nih.gov/pubmed/21240279">"Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans,"</a> <i>Nature Methods</i>, 2011, Feb 8 (2):147-152.</p>
<h4><a href="http://github.com/samuellab/mindcontrol-access-utils">MindControl Access Utilities</a></h4>
<p>MATLAB utilities to import YAML data files created by <a href="http://github.com/samuellab/mindcontrol">MindControl</a>.</p>
<h4><a href="https://github.com/samuellab/InterProcess">InterProcess</a></h4>
<p>A compact C library to share data between processes on Windows. Fast. Simple.</p>
<hr class="space">
<h3>Web Sites</h3>
<h4><a href="http://github.com/aleifer/andrewleifer.com/">andrewleifer.com</a></h4>
<p>Source for this website!</p>
<h4><a href="http://github.com/samuellab/colbert.physics.harvard.edu/">colbert.physics.harvard.edu</a></h4>
<p>Source for <a href="http://colbert.physics.harvard.edu">colbert.physics.harvard.edu</a>.</p>
<hr class="space">
<h3>InnoBox Devices</h3>
<a href="http://innoboxdevices.com">InnoBox Devices</a> is a small venture with <a href="http://bemasc.net" target="_blank">Ben Schwartz</a> to sell plug-and-play wiki server hardware appliances for school or laboratory settings.
<h4><a href="https://github.com/InnoBox/Core">InnoBox Core</a></h4>
<p>Core InnoBox functionality. Meant to sit atop Tunrkey Linux Core. Written with Ben Schwartz. See also <a href="https://github.com/InnoBox/Backup">Backup</a> and <a href="https://github.com/InnoBox/WikiPatch">WikiPatch</a>.</p>
</div>
<div class="span-7 last">
<a href="images/mindcontrol_screenshot_small.full">
<div class="box">
<img src="images/mindcontrol_screenshot_small.png" width="222">
<p><a href="http://github.com/samuellab/MindControl">MindControl</a> software suite for <i>C. elegans</i> optogenetic neuroscience research.</a>
</div>
</a>
</div>
<?php
include("footer.inc");
?>