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environment.yml
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environment.yml
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name: simpleaf
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- alevin-fry=0.8.1=hb3ea9af_0
- anndata=0.8.0=pyhd8ed1ab_1
- anyio=3.6.2=pyhd8ed1ab_0
- appnope=0.1.3=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h90acd4f_3
- asttokens=2.2.1=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- babel=2.12.1=pyhd8ed1ab_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.12.0=pyha770c72_0
- bedtools=2.30.0=h0e31d98_3
- biopython=1.81=py310h90acd4f_0
- bleach=6.0.0=pyhd8ed1ab_0
- boost-cpp=1.74.0=hdbf7018_7
- brotli=1.0.9=hb7f2c08_8
- brotli-bin=1.0.9=hb7f2c08_8
- brotlipy=0.7.0=py310h90acd4f_1005
- bzip2=1.0.8=h0d85af4_4
- c-ares=1.18.1=h0d85af4_0
- ca-certificates=2022.12.7=h033912b_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py310ha78151a_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.3=pyhd8ed1ab_0
- contourpy=1.0.7=py310ha23aa8a_0
- cryptography=40.0.1=py310hdd0c95c_0
- cycler=0.11.0=pyhd8ed1ab_0
- debugpy=1.6.6=py310h7a76584_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- flit-core=3.8.0=pyhd8ed1ab_0
- fonttools=4.39.3=py310h90acd4f_0
- freetype=2.12.1=h3f81eb7_1
- h5py=3.8.0=nompi_py310h1de854f_101
- hdf5=1.14.0=nompi_hbf0aa07_103
- icu=69.1=he49afe7_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.1.0=pyha770c72_0
- importlib_metadata=6.1.0=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- ipykernel=6.22.0=pyh736e0ef_0
- ipython=8.12.0=pyhd1c38e8_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=8.1.0=pyhd8ed1ab_0
- jupyter_core=5.3.0=py310h2ec42d9_0
- jupyter_events=0.6.3=pyhd8ed1ab_0
- jupyter_server=2.5.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab=3.5.0=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.21.0=pyhd8ed1ab_0
- kiwisolver=1.4.4=py310ha23aa8a_1
- krb5=1.20.1=h049b76e_0
- lcms2=2.15=h2dcdeff_1
- lerc=4.0.0=hb486fe8_0
- libaec=1.0.6=hf0c8a7f_1
- libblas=3.9.0=16_osx64_openblas
- libbrotlicommon=1.0.9=hb7f2c08_8
- libbrotlidec=1.0.9=hb7f2c08_8
- libbrotlienc=1.0.9=hb7f2c08_8
- libcblas=3.9.0=16_osx64_openblas
- libcurl=7.88.1=h6df9250_1
- libcxx=16.0.0=h71dddab_0
- libdeflate=1.18=hac1461d_0
- libedit=3.1.20191231=h0678c8f_2
- libev=4.33=haf1e3a3_1
- libffi=3.4.2=h0d85af4_5
- libgfortran=5.0.0=11_3_0_h97931a8_31
- libgfortran5=12.2.0=he409387_31
- libjemalloc=5.3.0=hf0c8a7f_0
- libjpeg-turbo=2.1.5.1=hb7f2c08_0
- liblapack=3.9.0=16_osx64_openblas
- libllvm11=11.1.0=h8fb7429_5
- libnghttp2=1.52.0=he2ab024_0
- libopenblas=0.3.21=openmp_h429af6e_3
- libpng=1.6.39=ha978bb4_0
- libsodium=1.0.18=hbcb3906_1
- libsqlite=3.40.0=ha978bb4_0
- libssh2=1.10.0=h47af595_3
- libtiff=4.5.0=hedf67fa_6
- libwebp-base=1.3.0=hb7f2c08_0
- libxcb=1.13=h0d85af4_1004
- libzlib=1.2.13=hfd90126_4
- llvm-openmp=16.0.0=h61d9ccf_0
- llvmlite=0.39.1=py310h2bfb868_1
- markupsafe=2.1.2=py310h90acd4f_0
- matplotlib-base=3.7.1=py310he725631_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.5=pyhd8ed1ab_0
- munkres=1.0.7=py_1
- natsort=8.3.1=pyhd8ed1ab_0
- nbclassic=0.5.3=pyh8b2e9e2_2
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert-core=7.2.10=pyhd8ed1ab_1
- nbformat=5.8.0=pyhd8ed1ab_0
- ncls=0.0.66=py310hf3c2398_0
- ncurses=6.3=h96cf925_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=3.0=pyhd8ed1ab_0
- notebook=6.5.3=pyha770c72_0
- notebook-shim=0.2.2=pyhd8ed1ab_0
- numba=0.56.4=py310h62db5c2_0
- numpy=1.23.5=py310h1b7c290_0
- openjpeg=2.5.0=h13ac156_2
- openssl=3.1.0=hfd90126_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py310hecf8f37_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.4.0=py310h6b2f720_2
- pip=23.0.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.2.0=pyhd8ed1ab_0
- pooch=1.7.0=pyha770c72_3
- prometheus_client=0.16.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.38=pyha770c72_0
- prompt_toolkit=3.0.38=hd8ed1ab_0
- psutil=5.9.4=py310h90acd4f_0
- pthread-stubs=0.4=hc929b4f_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.14.0=pyhd8ed1ab_0
- pynndescent=0.5.8=pyh1a96a4e_0
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyranges=0.0.120=pyh7cba7a3_0
- pyrle=0.0.35=py310hd528523_1
- pyroe=0.9.0=pyhdfd78af_0
- pyrsistent=0.19.3=py310h90acd4f_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.10=he7542f4_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0=py310h90acd4f_5
- pyzmq=25.0.2=py310hf615a82_0
- readline=8.2=h9e318b2_1
- requests=2.28.2=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- salmon=1.10.1=h0d9fc6a_0
- scanpy=1.9.3=pyhd8ed1ab_0
- scikit-learn=1.2.2=py310h311060b_1
- scipy=1.10.1=py310h240c617_0
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- session-info=1.0.0=pyhd8ed1ab_0
- setuptools=67.6.1=pyhd8ed1ab_0
- simpleaf=0.10.0=hb3ea9af_1
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.0=pyhd8ed1ab_0
- sorted_nearest=0.0.37=py310hd528523_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.5=py310h936d966_2
- stdlib-list=0.8.0=pyhd8ed1ab_0
- tabulate=0.9.0=pyhd8ed1ab_1
- tbb=2021.8.0=hb8565cd_0
- terminado=0.17.1=pyhd1c38e8_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h5dbffcc_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.2=py310h90acd4f_1
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.5.0=hd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- umap-learn=0.5.3=py310h2ec42d9_0
- unicodedata2=15.0.0=py310h90acd4f_0
- urllib3=1.26.15=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- websocket-client=1.5.1=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h35c211d_0
- xorg-libxdmcp=1.1.3=h35c211d_0
- xz=5.2.6=h775f41a_0
- yaml=0.2.5=h0d85af4_2
- zeromq=4.3.4=he49afe7_1
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=hfd90126_4
- zstd=1.5.2=hbc0c0cd_6
- pip:
- anndata2ri==1.1
- cython==0.29.33
- dunamai==1.16.0
- get-version==3.5.4
- igraph==0.10.4
- leidenalg==0.9.1
- pytz-deprecation-shim==0.1.0.post0
- rpy2==3.5.10
- texttable==1.6.7
- tzdata==2023.3
- tzlocal==4.3
prefix: /Users/adrian/miniconda3/envs/simpleaf