From 72892e9e7d5c2142ea3ce69d68fec6327d11ea1e Mon Sep 17 00:00:00 2001 From: Chris Sewell Date: Fri, 18 Oct 2019 14:37:56 +0100 Subject: [PATCH] update changelog --- .gitchangelog.rc | 7 +++++ docs/source/changelog.rst | 66 +++++++++++++++++++++++++++++++++++++++ 2 files changed, 73 insertions(+) diff --git a/.gitchangelog.rc b/.gitchangelog.rc index e2130b7..e48dac9 100644 --- a/.gitchangelog.rc +++ b/.gitchangelog.rc @@ -94,6 +94,13 @@ ignore_regexps = [ r'^([cC]hg|[fF]ix|[nN]ew)\s*:\s*[d|D]ev:', r'^(.{3,3}\s*:)?\s*[fF]irst commit.?\s*$', r'^$', # ignore commits with empty messages + + # one time removals + r'^[Pp]re commit( test)? fix\.$', + r'^Add test for aiida development version.*$', + r'^Test correction\.$', + r'^Minor improvements\.$', + r'^Style test fix\.$', ] # ``section_regexps`` is a list of 2-tuples associating a string label and a diff --git a/docs/source/changelog.rst b/docs/source/changelog.rst index 48f8beb..8c9b967 100644 --- a/docs/source/changelog.rst +++ b/docs/source/changelog.rst @@ -1,6 +1,72 @@ Changelog ========= +v0.10.0b5 (2019-10-18) +---------------------- + +- Large improvement/refactor of properties calculations and workchains: + + - Rename ``cry_`` -> ``prop_`` + - Renamed ``crystal17.fermi`` -> ``crystal17.newk`` + - Subclass calculations from base ``PropAbstractCalculation``; + - all calculation take as input a wf_folder and parameter dict + - all calculations output a result dict + - no longer options to symlink wf_folder (it doesn't work) + - wf_folder can now be a standard folder (or remote) + - Add raw parsers for parsing properties stdout and gaussian cube files. + - Parsers all use ``read_properties_stdout`` to parse standard output data, and check for errors, + also exit codes are saved for each step, then the highest priority code is returned at the end. + - Changed inputs/outputs of ``crystal17.fermi``. + - Add ``crystal17.ech3`` calculation and parser (stores cube files as ``GaussianCube`` data objects). + - Updated CryPropertiesWorkChain to run multiple properties calculation. + - Add creation of VESTA file, from cube data file. + - ``crystal17.doss``; fix parsing of projections. + - Update band_gap calcfunction, to use correct energy units format. + - Add documentation: ``calc_doss``, ``workflow_properties``, ``calc_ech3``. + +- Improve CRYSTAL main stdout parser. + + - Extract mulliken orbital and shell populations. + - parse 0D (MOLECULE) cartesian coordinates + - improve regex for removing PROCESS and Fortran warning lines + - ignore ``all open_hca: getaddr_netdev ERROR`` lines, that can occur before program start. + - fix issues with computations that converge after the 1st cycle. + +- Add fort.9 raw parser. + +- Symmetry: allow for use of symbol (rather than kind) to define + inequivalent sites. + +- Improved `BasisSetData.set_file` and `BasisSetData.upload_basisset_family`, + to accept `pathlib.Path` and filelike objects. + +- Programatically Access Resource Files: + + Non-python files (JSON schema and raw files) are now accessed programatically, + using the `importlib_resources` package. + This means that (a) they can be accessed even if the package is zipped and, + (b) these files can be moved to a separate package in the future. + +- Replace Travis flake8/version tests with a pre-commit test: + + - Updated `pre-commit` and `yapf` versions have been updated, and + - `pre-commit run -a` has been applied to the repository. + - Added conda test, to check the `conda_dev_env.yml` works. + +- Add pytest plugin configuration: + + - Use pytest command-line arguments to control run configuration. + - Replace ``MOCK_CRY17_EXECUTABLES`` environmental variable with + ``pytest --cry17-no-mock``, + and ``CRY17_TEST_WORKDIR`` with ``pytest --cry17-workdir "test_workdir"``. + - Add ``--cry17-skip-exec``, for skipping tests call executable. + - Add ``pytest-notebook`` dependency and test function, to test and regenerate tutorial notebooks. + +- GULP: improve ReaxFF parser: + + - correctly handle read/write of ``X`` symbol + - allow reaxff tolerance value to be set, when reading file to dict. + v0.9.2b5 (2019-08-01) ---------------------