7appendices.tex

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\section*{Appendices}

\subsection*{GitHub Repository} \label{git}

Our public GitHub repository is available here: \url{https://github.com/ahodelin/Bachmann_Archive} \cite{AbelHodelinHernandez.2021}.
This repository is a collaborative effort of participants of the module "Bioinformatik und Systembiologie" in the Master Program \ac{bids}, organized by the Graduate School Rhein-Neckar in cooperation with the \ac{miracum}, a consortium of the \ac{mii}.

\subsection*{COMBINE Archive}

The fully featured \ac{combine} Archive of our project is available here: \url{https://cat.bio.informatik.uni-rostock.de/rest/share/6b507398-c103-4b92-9c90-d6b105ff1372} under the vignette  \textbf{::bachmann}. The original publication with the used model (Bachmann \textit{et al.}) is available here: \url{https://doi.org/https://doi.org/10.1038/msb.2011.50}.

\subsection*{Supplementary materials}
\begin{enumerate}
    \item Table 1: Selection of experiments for reproduction
    \item Table 2: Reproducibility Score Card from \cite{tiwari2021reproducibility}
    \item Figure 1: \ac{sbgn} map 
    \item Figure 2: Reproduction of Fig. 4 made by Tellurium
\end{enumerate}