From 93d11dc04a0861ea8546744fe25d8bb927f9e42c Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Fri, 10 Nov 2023 18:37:32 +0100 Subject: [PATCH] Update tar_to_directory dependency Should fix: ``` Traceback (most recent call last): File "", line 1, in File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 114, in extract common_prefix_dir = self.common_prefix_dir File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 103, in common_prefix_dir if len(common_prefix) >= 1 and not common_prefix.endswith(os.sep) and self.isdir(self.getmember(common_prefix)) \ File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 186, in isdir return getattr(self, 'isdir_%s' % self.type)(member) File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 189, in isdir_tar return member.isdir() AttributeError: 'NoneType' object has no attribute 'isdir' ``` seen on usegalaxy.eu with https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE176031&format=file --- lib/galaxy/datatypes/converters/tar_to_directory.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy/datatypes/converters/tar_to_directory.xml b/lib/galaxy/datatypes/converters/tar_to_directory.xml index c0c8714a5e51..59354b39b5fd 100644 --- a/lib/galaxy/datatypes/converters/tar_to_directory.xml +++ b/lib/galaxy/datatypes/converters/tar_to_directory.xml @@ -1,7 +1,7 @@ - galaxy-util + galaxy-util mkdir '$output1.files_path';