From 2d1680b0421a2777234cc2a04a5c34c9b7c3197d Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Tue, 13 Aug 2024 13:10:31 +0200 Subject: [PATCH] Really do change PJA in test case --- lib/galaxy_test/api/test_workflows.py | 16 ++++++++++++++-- 1 file changed, 14 insertions(+), 2 deletions(-) diff --git a/lib/galaxy_test/api/test_workflows.py b/lib/galaxy_test/api/test_workflows.py index c42da227984e..cfb723048934 100644 --- a/lib/galaxy_test/api/test_workflows.py +++ b/lib/galaxy_test/api/test_workflows.py @@ -2086,14 +2086,25 @@ def test_run_workflow_pick_value_bam_pja(self): pick_from: - value: __class__: RuntimeValue + consume_index: + tool_id: metadata_bam + in: + input_bam: pick_value/data_param + tool_state: + ref_names: + - chr10_random + - chr11 + - chrM + - chrX + - chr16 outputs: pick_out: outputSource: pick_value/data_param """, test_data=""" some_file: - value: 1.bam - file_type: bam + value: 3.bam + file_type: unsorted.bam type: File """, history_id=history_id, @@ -2106,6 +2117,7 @@ def test_run_workflow_pick_value_bam_pja(self): ) assert dataset_details["metadata_reference_names"] assert dataset_details["metadata_bam_index"] + assert dataset_details["file_ext"] == "bam" def test_run_workflow_simple_conditional_step(self): with self.dataset_populator.test_history() as history_id: