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UnboundLocalError: local variable 'feature_db' referenced before assignment #171

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antss8 opened this issue Aug 8, 2024 · 1 comment

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@antss8
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antss8 commented Aug 8, 2024

Traceback (most recent call last):
File "/public/home/lzhu/.conda/envs/hjs/bin/liftoff", line 33, in
sys.exit(load_entry_point('Liftoff==1.6.3', 'console_scripts', 'liftoff')())
File "/public/home/lzhu/.conda/envs/hjs/lib/python3.9/site-packages/Liftoff-1.6.3-py3.9.egg/liftoff/run_$
File "/public/home/lzhu/.conda/envs/hjs/lib/python3.9/site-packages/Liftoff-1.6.3-py3.9.egg/liftoff/run_$
File "/public/home/lzhu/.conda/envs/hjs/lib/python3.9/site-packages/Liftoff-1.6.3-py3.9.egg/liftoff/lift$
File "/public/home/lzhu/.conda/envs/hjs/lib/python3.9/site-packages/Liftoff-1.6.3-py3.9.egg/liftoff/extr$
File "/public/home/lzhu/.conda/envs/hjs/lib/python3.9/site-packages/Liftoff-1.6.3-py3.9.egg/liftoff/extr$
File "/public/home/lzhu/.conda/envs/hjs/lib/python3.9/site-packages/Liftoff-1.6.3-py3.9.egg/liftoff/extr$
UnboundLocalError: local variable 'feature_db' referenced before assignment

@haydenji0731
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This appears to be a problem with the gffutils DB. I would try to remove the features DB created from your previous run(s) of LiftOff and re-run the tool. If the problem persists, let me know.

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