DESCRIPTION

Package: rema
Type: Package
Title: A generalized framework to fit the random effects (RE) model, 
    a state-space random walk model developed at the Alaska Fisheries Science 
    Center (AFSC) for apportionment and biomass estimation of groundfish and crab stocks.
Version: 1.2.0
Date: 2022-12-15
Authors@R: c(
    person("Jane", "Sullivan", email = "jane.sullivan@noaa.gov", role = c("aut", "cre")),
    person("Laurinne", "Balstad", email = "lbalstad@ucdavis.edu", role = c("aut", "ctb")),
    person("Cole", "Monnahan",  email = "cole.monnahan@noaa.gov", role = c("ctb")),
    person("Pete", "Hulson",  email = "pete.hulson@noaa.gov", role = c("ctb"))
    )
Description: This package provides a generalized framework to fit the random effects (RE) model, 
    a state-space random walk model developed at the Alaska Fisheries Science 
    Center (AFSC) for smoothing survey biomass estimates and apportioning catch among management areas. REMA is a multivariate 
    extension of the original single-survey, single-strata RE model that allows 
    the use of multiple strata within a survey and an additional survey (e.g. CPUE 
    or relative population numbers) to inform the biomass trend (Hulson et al. 2021). 
    If multi-survey mode is turned off, REMA runs the same as the univariate (RE) 
    and multivariate (i.e. multiple area or depth strata; REM) versions of the 
    model. REMA was developed in Template Model Builder (TMB; Kristensen et al. 2016).
Depends:
    R (>= 3.6.0)
Imports:
    TMB (>= 1.7.20),
    tidyr (>= 1.1.2),
    dplyr (>= 1.0.2),
    ggplot2 (>= 3.3.2),
    zoo (>= 1.7),
    sessioninfo (>= 1.1.1),
    abind (>= 1.4-5),
    rmarkdown (>= 2.11),
    knitr (>= 1.37),
    magrittr (>= 2.0.0)
LinkingTo:
    TMB (>= 1.8.1),
    RcppEigen (>= 0.3.3.9.1)
URL: https://github.com/JaneSullivan-NOAA/rema,
    https://afsc-assessments.github.io/rema/
BugReports: https://github.com/JaneSullivan-NOAA/rema/issues
License: GPL-3
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Encoding: UTF-8
Suggests: 
    testthat (>= 3.0.0),
    cowplot (>= 1.1.1),
    tmbstan,
    bayesplot,
    rstan
Remotes: kaskr/tmbstan/tmbstan
Config/testthat/edition: 3