Skip to content

Issues: aertslab/SCENIC

Questions?
#236 by s-aibar was closed Apr 14, 2022
Closed 1
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

105 Open 197 Closed
105 Open 197 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

problem with initializeScenic()
#471 opened Nov 25, 2024 by Mancang-Yu
Can this be used for bulk-tissue data?
#467 opened Sep 19, 2024 by guandailu
initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1)
#461 opened Jul 1, 2024 by YSYL-FSH
1
shiny::runApp NOT FOUND
#455 opened May 23, 2024 by TZUwang
1
No questions here, please! runSCENIC_3_scoreCells :Error in signif(trhAssignment, 3)
#454 opened May 14, 2024 by ManarHashemTaha
Error in file(con, "w") : all connections are in use
#453 opened Apr 30, 2024 by TZUwang
2
Installation Error
#451 opened Mar 26, 2024 by parkjooyoung99
1
Running GRNBoost as a batch job
#449 opened Mar 19, 2024 by MehvesOzel
could not find function "AUCell_createViewerApp"
#448 opened Mar 19, 2024 by Eunice0519
2
what is the difference between "motifAnnotations" and "motifAnnotations_hgnc_v9" , and what impact will it have on the results?
#447 opened Mar 13, 2024 by Chenchen3Chen
Could not initialize SCENIC
#446 opened Mar 3, 2024 by synatkeamsk
1
Scenic on HPC
#445 opened Feb 27, 2024 by Sogand65
1
Details about plot SCENIC results with cytoscape
#443 opened Feb 16, 2024 by DiracZhu1998
1
Error message during running runSCENIC_3_scoreCells()
#439 opened Jan 18, 2024 by jiuquzjw
6
run_SCENIC_2_createRegulons(): Warning
#438 opened Jan 11, 2024 by btsanketh
1
RSS top eRegulon jaccard heatmap
#436 opened Jan 4, 2024 by alirosen
Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores,
#429 opened Dec 6, 2023 by rraky
scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget")) #** Only for toy run!!
#428 opened Nov 30, 2023 by kakaisi
runSCENIC_3_scoreCells error
#427 opened Nov 24, 2023 by alisyedraza1
2
runSCENIC_3_scoreCells() error
#425 opened Nov 23, 2023 by alisyedraza1
3
TF dropout when running runSCENIC_2_createRegulons(scenicOptions)
#424 opened Nov 22, 2023 by rmauron
No questions here, please!
#423 opened Nov 22, 2023 by alisyedraza1
1
Comparison between two SCENIC networks
#419 opened Nov 5, 2023 by miguecass
1
exportsForArboreto input matrix log transformed or not
#418 opened Oct 22, 2023 by iichelhadi
These errors seem to be related to the R version...
#416 opened Oct 10, 2023 by jwg054000
ProTip! Follow long discussions with comments:>50.