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Error 132 - linger #75

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Hufflepuff1012 opened this issue Nov 8, 2022 · 0 comments
Open

Error 132 - linger #75

Hufflepuff1012 opened this issue Nov 8, 2022 · 0 comments

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@Hufflepuff1012
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Hi!

I have been running Wengan M to assemble Illumina short reads with long ONT reads, using the singularity, as follows:

/usr/bin/time -v singularity exec $CONTAINER perl ${WENGAN} \
 -x ontraw \
 -a M \
 -s Calhyp_14_R1.fastq.gz,Calhyp_14_R2.fastq.gz \
 -l merged.trimmed.fastq.gz \
 -p Calhyp_wengan -t 80 -g 12000

However, when it reaches the step with liger, something makes the job crash.
Liger does seem to run for a while before crashing. In the *.liger.err file, this error is reported: Illegal instruction (core dumped).
On my screen, this message appears:

Calhyp_wengan.mk:64: recipe for target 'Calhyp_wengan.SPolished.asm.wengan.fasta' failed
make: *** [Calhyp_wengan.SPolished.asm.wengan.fasta] Error 132

Thinking this may be an issue with a version of liger, I tried to re-run the last line of the process manually with a version of linger that I installed manually. But, the problem still occurs and the program crashes:
Illegal instruction (core dumped)

Any insight on what could be the explanation?

Thank you very much!

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