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When I test the software in normal mode, minimap2 works correctly in the "Running Contig Analyzer" step.
The command is quast.py --test, and the output log is:
However, when I test the software in meta mode, minimap2 cannot works correctly in the "Running Contig Analyzer" step.
The command is metaquast.py --test-no-ref, and the output log is:
ERROR! Critical! Tried to use minimap2, but it was unavailable despite QUAST's sincere expectations! E.g., the binary file is present but corrupted.
Possible workarounds:
1. Remove the minimap2 binary and restart QUAST (it will automatically try to recompile it): rm -f <quast_installation_dir>/quast_libs/minimap2/minimap2
2. Go to <quast_installation_dir>/quast_libs/minimap2/ and recompile minimap2 manually
3. Install a proper version of minimap2 and add it to your PATH environment variable
I recompiled minimap2 based on the provided solution in the error message, but the issue still persists.
This confuses me a lot. And hope to get your help, thanks.
The text was updated successfully, but these errors were encountered:
Hi,
I'm using QUAST to evaluate a metagenomic assembly (fasta).
I installe QUAST using conda and download test data.
When I test the software in normal mode, minimap2 works correctly in the "Running Contig Analyzer" step.
The command is
quast.py --test
, and the output log is:However, when I test the software in meta mode, minimap2 cannot works correctly in the "Running Contig Analyzer" step.
The command is
metaquast.py --test-no-ref
, and the output log is:I recompiled minimap2 based on the provided solution in the error message, but the issue still persists.
This confuses me a lot. And hope to get your help, thanks.
The text was updated successfully, but these errors were encountered: