From 7aaee01eba17d85703fecaee4aadbca6cbfa0f95 Mon Sep 17 00:00:00 2001 From: Alexey Gurevich Date: Wed, 24 Jan 2018 18:13:26 +0300 Subject: [PATCH] Version, Changes and Manual updates --- CHANGES.txt | 10 +++++++++- VERSION.txt | 2 +- manual.html | 14 +++++++------- 3 files changed, 17 insertions(+), 9 deletions(-) diff --git a/CHANGES.txt b/CHANGES.txt index a27eb2f436..af40ffb7da 100644 --- a/CHANGES.txt +++ b/CHANGES.txt @@ -1,12 +1,20 @@ -- Version history -- +4.6.2 + 1. Fixed relatively rare bug of BSS when using large --min-alignment. + + 2. Improved check of previously generated results before reusing them. + + 3. GeneMark licence files are updated. + + 4.6.1 1. Fixes in pip installation: - ignoring bdist_wheel and running regular installation instead; - no installation of aux files (LICENSE, Manual, etc); - proper error message about missing test_data dir (if "--test" is used). - 2. Fixed conda installation (no GeneMark installation if there is no home dir) + 2. Fixed conda installation (no GeneMark installation if there is no home dir). 4.6.0 diff --git a/VERSION.txt b/VERSION.txt index 8ac28bf9f0..c78c4964ca 100644 --- a/VERSION.txt +++ b/VERSION.txt @@ -1 +1 @@ -4.6.1 +4.6.2 diff --git a/manual.html b/manual.html index e6b4e711ea..202267ef80 100644 --- a/manual.html +++ b/manual.html @@ -1,6 +1,6 @@ - QUAST 4.6.1 manual + QUAST 4.6.2 manual -

QUAST 4.6.1 manual

+

QUAST 4.6.2 manual

QUAST stands for QUality ASsessment Tool. The tool evaluates genome assemblies by computing various metrics. This document provides instructions @@ -99,7 +99,7 @@

QUAST 4.6.1 manual

for guidelines on how to complete the licensing process.

- Version 4.6.1 of QUAST was released under GPL v2 on 6 December 2017. Note that some of build-in third-party tools are not under GPL v2. See LICENSE for details. + Version 4.6.2 of QUAST was released under GPL v2 on 25 January 2018. Note that some of build-in third-party tools are not under GPL v2. See LICENSE for details.

Contents

@@ -169,11 +169,11 @@

1. Installation

sudo apt-get install -y pkg-config libfreetype6-dev libpng-dev python-matplotlib
-To download the QUAST source code tarball and extract it, type: +To download the QUAST source code tarball and extract it, type: 
-    wget https://downloads.sourceforge.net/project/quast/quast-4.6.1.tar.gz
-    tar -xzf quast-4.6.1.tar.gz
-    cd quast-4.6.1
+    wget https://downloads.sourceforge.net/project/quast/quast-4.6.2.tar.gz
+    tar -xzf quast-4.6.2.tar.gz
+    cd quast-4.6.2