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Bug reporting Orthogroup tool #46
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@Mataivic Do you have an idea? |
At first look, possibly a problem with the regex in the |
@casteljade Can you share your Galaxy history with me please ? ([email protected]) |
Normally it's shared. Tell me if this is not the case.
Thank you so much.
Jade
Le dim. 4 août 2019 à 10:32, Mataivic <[email protected]> a écrit :
… @casteljade <https://github.com/casteljade> Can you share your Galaxy
history with me please ? ***@***.***)
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@casteljade Apparently it didn't work, I don't see it in my shared histories. Anyway, I checked and this is indeed a problem with the regex : the OrthoFinder version which has been used does not write the genes headers as expected by the script. There are unexpected characters, like |
Hello, |
@casteljade I need to access all your data to be sure, but I still can't see your Galaxy's history. Did you use OrthoFinder within Galaxy or externally and then sent the files into Galaxy ? If I'm correct, the OrthoFinder version (2.1.2) used by Galaxy is not supposed to return Orthogroups written like that. Also I don't understand why genes' names appear several time in the orthogroups (haven't used OrthoFinder since version 2.1.2). |
Bonjour,
J'ai un problème à l'étape Orthogroup tool et je ne comprend pas le message d'erreur.
Mes fichiers d'entrées sont les suivant :
Orthogroups. txt qui est sous la forme suivante :
et Filter Assemblies Output où les fichiers sont sous ce format:
Merci d'avance de votre aide,
Castel Jade
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