Python_GDC_Heatmap

Created for CSI4900 - Honours Project

Python script to create a heatmap based on correlations in GDC expression data of PTEN with other genes.

Created to work with files/data generated by the following scripts:

1. Downloading: https://github.com/bbpgrs/Python_GDC_DL

2. Normalization: https://github.com/obawany/Normalizing-data-using-python

3. Integration (combining): https://github.com/bbpgrs/Python_GDC_Integration

4. Correlation: https://github.com/bbpgrs/Python_GDC_Correlation

5. Acquiring list of genes to place on heatmap: https://github.com/obawany/Text-Extraction

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Required to run:

Python 3

Pandas library

pip install pandas

Matplotlib library

pip install matplotlib

Seaborn library

pip install seaborn