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main.py
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main.py
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import argparse
import datetime
from os import read
from random import shuffle
from matplotlib.pyplot import pink
import numpy as np
import time
from timm import optim
import torch
import torch.backends.cudnn as cudnn
import json
import math
from pathlib import Path
import torch.optim as optim
import torch.optim.lr_scheduler as scheduler
from utils import Mixup
from timm.models import create_model
from timm.loss import LabelSmoothingCrossEntropy, SoftTargetCrossEntropy
from timm.scheduler import create_scheduler
from timm.optim import create_optimizer
from timm.utils import NativeScaler, get_state_dict, ModelEma
from datasets import build_dataset, MyDataSet, read_split_data, build_transform
from engine import train_one_epoch, evaluate
from samplers import RASampler
import utils
import models
# from fvcore.nn import FlopCountAnalysis
def get_args_parser():
parser = argparse.ArgumentParser('DeiT training and evaluation script', add_help=False)
parser.add_argument('--batch-size', default=16, type=int)
parser.add_argument('--epochs', default=200, type=int)
# Model parameters
parser.add_argument('--model', default='Conformer_small_patch16', type=str, metavar='MODEL',
help='Name of model to train')
parser.add_argument('--input-size', default=320, type=int, help='images input size')
parser.add_argument('--drop', type=float, default=0.0, metavar='PCT',
help='Dropout rate (default: 0.)')
parser.add_argument('--drop-path', type=float, default=0.1, metavar='PCT',
help='Drop path rate (default: 0.1)')
parser.add_argument('--drop-block', type=float, default=None, metavar='PCT',
help='Drop block rate (default: None)')
parser.add_argument('--model-ema', action='store_true')
parser.add_argument('--no-model-ema', action='store_false', dest='model_ema')
parser.set_defaults(model_ema=True)
parser.add_argument('--model-ema-decay', type=float, default=0.99996, help='')
parser.add_argument('--model-ema-force-cpu', action='store_true', default=False, help='')
# Optimizer parameters
parser.add_argument('--opt', default='adamw', type=str, metavar='OPTIMIZER',
help='Optimizer (default: "adamw"')
parser.add_argument('--opt-eps', default=1e-8, type=float, metavar='EPSILON',
help='Optimizer Epsilon (default: 1e-8)')
parser.add_argument('--opt-betas', default=None, type=float, nargs='+', metavar='BETA',
help='Optimizer Betas (default: None, use opt default)')
parser.add_argument('--clip-grad', type=float, default=None, metavar='NORM',
help='Clip gradient norm (default: None, no clipping)')
parser.add_argument('--momentum', type=float, default=0.9, metavar='M',
help='SGD momentum (default: 0.9)')
parser.add_argument('--weight-decay', type=float, default=0.0005,
help='weight decay (default: 0.05)')
# Learning rate schedule parameters
parser.add_argument('--sched', default='cosine', type=str, metavar='SCHEDULER',
help='LR scheduler (default: "cosine"')
parser.add_argument('--lr', type=float, default=0.001, metavar='LR',
help='learning rate (default: 5e-4)')
parser.add_argument('--lrf', type=float, default=0.01)
parser.add_argument('--lr-noise', type=float, nargs='+', default=None, metavar='pct, pct',
help='learning rate noise on/off epoch percentages')
parser.add_argument('--lr-noise-pct', type=float, default=0.67, metavar='PERCENT',
help='learning rate noise limit percent (default: 0.67)')
parser.add_argument('--lr-noise-std', type=float, default=1.0, metavar='STDDEV',
help='learning rate noise std-dev (default: 1.0)')
parser.add_argument('--warmup-lr', type=float, default=1e-6, metavar='LR',
help='warmup learning rate (default: 1e-6)')
parser.add_argument('--min-lr', type=float, default=1e-5, metavar='LR',
help='lower lr bound for cyclic schedulers that hit 0 (1e-5)')
parser.add_argument('--decay-epochs', type=float, default=30, metavar='N',
help='epoch interval to decay LR')
parser.add_argument('--warmup-epochs', type=int, default=5, metavar='N',
help='epochs to warmup LR, if scheduler supports')
parser.add_argument('--cooldown-epochs', type=int, default=10, metavar='N',
help='epochs to cooldown LR at min_lr, after cyclic schedule ends')
parser.add_argument('--patience-epochs', type=int, default=10, metavar='N',
help='patience epochs for Plateau LR scheduler (default: 10')
parser.add_argument('--decay-rate', '--dr', type=float, default=0.1, metavar='RATE',
help='LR decay rate (default: 0.1)')
# Augmentation parameters
parser.add_argument('--color-jitter', type=float, default=0.4, metavar='PCT',
help='Color jitter factor (default: 0.4)')
parser.add_argument('--aa', type=str, default='rand-m9-mstd0.5-inc1', metavar='NAME',
help='Use AutoAugment policy. "v0" or "original". " + \
"(default: rand-m9-mstd0.5-inc1)'),
parser.add_argument('--smoothing', type=float, default=0.1, help='Label smoothing (default: 0.1)')
parser.add_argument('--train-interpolation', type=str, default='bicubic',
help='Training interpolation (random, bilinear, bicubic default: "bicubic")')
parser.add_argument('--repeated-aug', action='store_true')
parser.add_argument('--no-repeated-aug', action='store_false', dest='repeated_aug')
parser.set_defaults(repeated_aug=True)
# * Random Erase params
parser.add_argument('--reprob', type=float, default=0.25, metavar='PCT',
help='Random erase prob (default: 0.25)')
parser.add_argument('--remode', type=str, default='pixel',
help='Random erase mode (default: "pixel")')
parser.add_argument('--recount', type=int, default=1,
help='Random erase count (default: 1)')
parser.add_argument('--resplit', action='store_true', default=False,
help='Do not random erase first (clean) augmentation split')
# * Mixup params
parser.add_argument('--mixup', type=float, default=0.8,
help='mixup alpha, mixup enabled if > 0. (default: 0.8)')
parser.add_argument('--cutmix', type=float, default=1.0,
help='cutmix alpha, cutmix enabled if > 0. (default: 1.0)')
parser.add_argument('--cutmix-minmax', type=float, nargs='+', default=None,
help='cutmix min/max ratio, overrides alpha and enables cutmix if set (default: None)')
parser.add_argument('--mixup-prob', type=float, default=1.0,
help='Probability of performing mixup or cutmix when either/both is enabled')
parser.add_argument('--mixup-switch-prob', type=float, default=0.5,
help='Probability of switching to cutmix when both mixup and cutmix enabled')
parser.add_argument('--mixup-mode', type=str, default='batch',
help='How to apply mixup/cutmix params. Per "batch", "pair", or "elem"')
# Dataset parameters
parser.add_argument('--data-path', default='/media/data2/huzhen/讯飞_PETMRI复赛/MergePET/images', type=str,
help='dataset path')
parser.add_argument('--nb_classes', type=int, default=3)
parser.add_argument('--data-set', default='PET', choices=['CIFAR', 'CIFAR10', 'IMNET', 'INAT', 'INAT19'],
type=str, help='Image Net dataset path')
parser.add_argument('--inat-category', default='name',
choices=['kingdom', 'phylum', 'class', 'order', 'supercategory', 'family', 'genus', 'name'],
type=str, help='semantic granularity')
# * Finetuning params
parser.add_argument('--finetune', default='./preweights/Conformer_small_patch16.pth', help='finetune from checkpoint')
parser.add_argument('--evaluate-freq', type=int, default=1, help='frequency of perform evaluation (default: 5)')
parser.add_argument('--output_dir', default='./MergePET',
help='path where to save, empty for no saving')
parser.add_argument('--device', default='cuda:2',
help='device to use for training / testing')
parser.add_argument('--seed', default=0, type=int)
parser.add_argument('--resume', default='', help='resume from checkpoint')
parser.add_argument('--start_epoch', default=0, type=int, metavar='N',
help='start epoch')
parser.add_argument('--eval', action='store_true', help='Perform evaluation only')
parser.add_argument('--num_workers', default=4, type=int)
parser.add_argument('--pin-mem', action='store_true',
help='Pin CPU memory in DataLoader for more efficient (sometimes) transfer to GPU.')
parser.add_argument('--no-pin-mem', action='store_false', dest='pin_mem',
help='')
parser.set_defaults(pin_mem=True)
# distributed training parameters 下面针对的是Multi-GPU训练使用的参数
parser.add_argument('--world_size', default=1, type=int,
help='number of distributed processes')
parser.add_argument('--dist_url', default='', help='url used to set up distributed training')
return parser
def main(args):
utils.init_distributed_mode(args)
print(args)
device = torch.device(args.device)
# fix the seed for reproducibility
seed = args.seed + utils.get_rank()
torch.manual_seed(seed)
np.random.seed(seed)
# random.seed(seed)
cudnn.benchmark = True
dataset_train, args.nb_classes = build_dataset(is_train=True, args=args)
dataset_val, _ = build_dataset(is_train=False, args=args)
if False: # args.distributed:
num_tasks = utils.get_world_size()
global_rank = utils.get_rank()
if args.repeated_aug:
sampler_train = RASampler(
dataset_train, num_replicas=num_tasks, rank=global_rank, shuffle=True
)
else:
sampler_train = torch.utils.data.DistributedSampler(
dataset_train, num_replicas=num_tasks, rank=global_rank, shuffle=True
)
else:
sampler_train = torch.utils.data.RandomSampler(dataset_train)
# train_images_path, train_images_label, val_images_path, val_images_label = read_split_data(args.data_path,val_rate=0.1)
# train_transform = build_transform(is_train=True, args=args)
# val_transform = build_transform(is_train=False, args=args)
# dataset_train = MyDataSet(images_path=train_images_path,
# images_class=train_images_label,
# transform=train_transform)
# dataset_val = MyDataSet(images_path=val_images_path,
# images_class=val_images_label,
# transform=val_transform)
data_loader_train = torch.utils.data.DataLoader(
dataset_train, sampler=sampler_train,
batch_size=args.batch_size,
num_workers=args.num_workers,
pin_memory=args.pin_mem,
drop_last=True
)
data_loader_val = torch.utils.data.DataLoader(
dataset_val, batch_size=int(2.0 * args.batch_size),
shuffle=False,
num_workers=args.num_workers,
pin_memory=args.pin_mem,
drop_last=False
)
mixup_fn = None
mixup_active = args.mixup > 0 or args.cutmix > 0. or args.cutmix_minmax is not None
if mixup_active:
mixup_fn = Mixup(
mixup_alpha=args.mixup, cutmix_alpha=args.cutmix, cutmix_minmax=args.cutmix_minmax,
prob=args.mixup_prob, switch_prob=args.mixup_switch_prob, mode=args.mixup_mode,
label_smoothing=args.smoothing, num_classes=args.nb_classes)
print(f"Creating model: {args.model}")
model = create_model(
args.model,
pretrained=False,
num_classes=args.nb_classes,
drop_rate=args.drop,
drop_path_rate=args.drop_path,
drop_block_rate=args.drop_block,
)
# 加载预训练权重
if args.finetune:
if args.finetune.startswith('https'):
checkpoint = torch.hub.load_state_dict_from_url(
args.finetune, map_location='cpu', check_hash=True)
else:
checkpoint = torch.load(args.finetune, map_location='cpu')
if 'model' in checkpoint.keys():
checkpoint_model = checkpoint['model']
else:
checkpoint_model = checkpoint
state_dict = model.state_dict()
for k in ['head.weight', 'head.bias', 'head_dist.weight', 'head_dist.bias',
'trans_cls_head.weight', 'trans_cls_head.bias', 'conv_cls_head.weight', 'conv_cls_head.bias']:
if k in checkpoint_model and checkpoint_model[k].shape != state_dict[k].shape:
print(f"Removing key {k} from pretrained checkpoint")
del checkpoint_model[k]
if 'pos_embed' in checkpoint_model.keys():
# interpolate position embedding
pos_embed_checkpoint = checkpoint_model['pos_embed']
embedding_size = pos_embed_checkpoint.shape[-1]
num_patches = model.patch_embed.num_patches
num_extra_tokens = model.pos_embed.shape[-2] - num_patches
# height (== width) for the checkpoint position embedding
orig_size = int((pos_embed_checkpoint.shape[-2] - num_extra_tokens) ** 0.5)
# height (== width) for the new position embedding
new_size = int(num_patches ** 0.5)
# class_token and dist_token are kept unchanged
extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
# only the position tokens are interpolated
pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
pos_tokens = pos_tokens.reshape(-1, orig_size, orig_size, embedding_size).permute(0, 3, 1, 2)
pos_tokens = torch.nn.functional.interpolate(
pos_tokens, size=(new_size, new_size), mode='bicubic', align_corners=False)
pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
checkpoint_model['pos_embed'] = new_pos_embed
model.load_state_dict(checkpoint_model, strict=False)
model.to(device)
model_ema = None
if args.model_ema:
# Important to create EMA model after cuda(), DP wrapper, and AMP but before SyncBN and DDP wrapper
model_ema = ModelEma(
model,
decay=args.model_ema_decay,
device='cpu' if args.model_ema_force_cpu else '',
resume='')
model_without_ddp = model
if args.distributed:
model = torch.nn.parallel.DistributedDataParallel(model, device_ids=[args.gpu])
model_without_ddp = model.module
n_parameters = sum(p.numel() for p in model.parameters() if p.requires_grad)
print('number of params:', n_parameters)
# linear_scaled_lr = args.lr * args.batch_size * utils.get_world_size() / 512.0
# args.lr = linear_scaled_lr
for param in model.parameters():
param.requires_grad = True
for param in model_without_ddp.parameters():
param.requires_grad = True
# pg = [p for p in model.parameters() if p.requires_grad]
# optimizer = optim.SGD(pg, lr = args.lr, momentum=args.momentum, weight_decay=1e-4)
# lf = lambda x: ((1 + math.cos(x * math.pi / args.epochs)) / 2) * (1 - args.lrf) + args.lrf # cosine
# lr_scheduler = scheduler.LambdaLR(optimizer, lr_lambda=lf)
loss_scaler = NativeScaler()
optimizer = create_optimizer(args, model)
lr_scheduler, _ = create_scheduler(args, optimizer)
criterion = LabelSmoothingCrossEntropy()
if args.mixup > 0.:
# smoothing is handled with mixup label transform
criterion = SoftTargetCrossEntropy()
elif args.smoothing:
criterion = LabelSmoothingCrossEntropy(smoothing=args.smoothing)
else:
criterion = torch.nn.CrossEntropyLoss()
output_dir = Path(args.output_dir)
if args.resume:
if args.resume.startswith('https'):
checkpoint = torch.hub.load_state_dict_from_url(
args.resume, map_location='cpu', check_hash=True)
else:
checkpoint = torch.load(args.resume, map_location='cpu')
# pdb.set_trace()
if 'model' in checkpoint.keys():
model_without_ddp.load_state_dict(checkpoint['model'])
else:
model_without_ddp.load_state_dict(checkpoint)
if not args.eval and 'optimizer' in checkpoint and 'lr_scheduler' in checkpoint and 'epoch' in checkpoint:
optimizer.load_state_dict(checkpoint['optimizer'])
lr_scheduler.load_state_dict(checkpoint['lr_scheduler'])
args.start_epoch = checkpoint['epoch'] + 1
if args.model_ema:
utils._load_checkpoint_for_ema(model_ema, checkpoint['model_ema'])
if args.eval:
test_stats = evaluate(data_loader_val, model, device)
print(f"Accuracy of the network on the {len(dataset_val)} test images: {test_stats['acc1']:.1f}%")
return
print("Start training")
start_time = time.time()
max_accuracy = 0.0
for epoch in range(args.start_epoch, args.epochs):
if args.distributed:
data_loader_train.sampler.set_epoch(epoch)
train_stats = train_one_epoch(
model, criterion, data_loader_train,
optimizer, device, epoch, loss_scaler,
args.clip_grad, model_ema, mixup_fn,
set_training_mode = True,
# set_training_mode=args.finetune == '' # keep in eval mode during finetuning
)
lr_scheduler.step(epoch)
# if args.output_dir:
# checkpoint_paths = [output_dir / 'checkpoint.pth']
# for checkpoint_path in checkpoint_paths:
# utils.save_on_master({
# 'model': model_without_ddp.state_dict(),
# 'optimizer': optimizer.state_dict(),
# 'lr_scheduler': lr_scheduler.state_dict(),
# 'epoch': epoch,
# 'model_ema': get_state_dict(model_ema),
# 'args': args,
# }, checkpoint_path)
if epoch % args.evaluate_freq == 0:
test_stats = evaluate(data_loader_val, model, device)
print(f"Accuracy of the network on the {len(dataset_val)} test images: {test_stats['acc1']:.1f}%")
max_accuracy = max(max_accuracy, test_stats["acc1"])
print(f'Max accuracy: {max_accuracy:.2f}%')
log_stats = {**{f'train_{k}': v for k, v in train_stats.items()},
**{f'test_{k}': v for k, v in test_stats.items()},
'epoch': epoch,
'n_parameters': n_parameters}
if args.output_dir and utils.is_main_process():
with (output_dir / "log.txt").open("a") as f:
f.write(json.dumps(log_stats) + "\n")
test_acc1 = test_stats['acc1'] # conv分支 + Transformer分支的预测值
test_acc2 = test_stats['acc1_head1'] # conv分支的预测值
if test_acc1 > 70.00 and test_acc2 > 75.00:
torch.save(model.state_dict(), "./MergePET/model-{}-{}.pth".format(epoch, test_acc1))
total_time = time.time() - start_time
total_time_str = str(datetime.timedelta(seconds=int(total_time)))
print('Training time {}'.format(total_time_str))
if __name__ == '__main__':
parser = argparse.ArgumentParser('DeiT training and evaluation script', parents=[get_args_parser()])
args = parser.parse_args()
if args.output_dir:
Path(args.output_dir).mkdir(parents=True, exist_ok=True)
main(args)